Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181584g00005 ATGATGCTTGGATTATCCTCTTCTCCAACTATGTTCCCTAATAACATGGAATGGCCCTTACACTTAGAAGAAGAAGTAAGTCTCAACTCACAAGACTTTCCATTACTCCATCAACAATTCTCTTCTTCCATGGCCAAGAAGCTTAATCACAATGCAAGCGAGCGCCACCGCCGCAAGAAGATCAATGCCTTGTACTCTTCTCTCCGTTCACTCCTCCCTCTTTCAGATCAAACGAAGAAGATGAGCATCCCAGCAACGATTTCAAGAGTGTTGAAATACATACCTGAGTTGCAACAACAGGTGGAAGAACTCATCAAGAAAAAGGAGGAGCTCTTGTTGAGAATTTCTCAGCAAGGGGGGGATATCAATAATAATGTTGCAGCAGTGAAGAAGAAAGAATCTACTGTAAGGAAGAAAGTGCATCCTCAGAACTCTGCTTGTGCTTTTCTGGTTTCATCAATTAGTAGGGTCAGTCAAAGTGAAGTTAGTATCCAGATAATTTCTCCCTATGAGATGATTCATAAGTGTCCACTATCTGAAATCTTGGTGTGTTTGGAAAATCAATATGCCCTTCAACTGCTAAATGCTTCTTCCTTTGACACCCTTGGAGGAAGGCTCTTCTATAATCTGCATTTTCAGGTGGAAAAGATTGCTGCATTAGACTCAGAATCTGTAAGGGAGAAGATCTTGTCAATATGTGAGAAGCATGAAAGAATTATGAAAGATCAAATTAAATATCTTGGCTTCTCGGATGCACAATTATGTAATGCCTAA 774 0.4018 MMLGLSSSPTMFPNNMEWPLHLEEEVSLNSQDFPLLHQQFSSSMAKKLNHNASERHRRKKINALYSSLRSLLPLSDQTKKMSIPATISRVLKYIPELQQQVEELIKKKEELLLRISQQGGDINNNVAAVKKKESTVRKKVHPQNSACAFLVSSISRVSQSEVSIQIISPYEMIHKCPLSEILVCLENQYALQLLNASSFDTLGGRLFYNLHFQVEKIAALDSESVREKILSICEKHERIMKDQIKYLGFSDAQLCNA 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181584g00005 257 Pfam Helix-loop-helix DNA-binding domain 46 98 IPR011598 GO:0046983
Stsc181584g00005 257 FunFam Transcription factor ORG2 41 126 - -
Stsc181584g00005 257 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 45 97 IPR011598 GO:0046983
Stsc181584g00005 257 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 44 229 - -
Stsc181584g00005 257 Coils Coil 94 114 - -
Stsc181584g00005 257 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 45 117 IPR036638 GO:0046983
Stsc181584g00005 257 Gene3D - 37 140 IPR036638 GO:0046983
Stsc181584g00005 257 SMART finulus 51 103 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181584g00005 Stsc-Chr181584 12989 14235 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181584g00005 44 237 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G56970 44.898 2.21e-43 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc181584g00005 HLH 9.5e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181584g00005 - - adu:107492670 275.404