Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181582g00001 ATGGCTGCTGCTGCTAAACATTTGACACCAGTAGTGCTGGAGCTCGGAGGAAAATCTCCAGTTGTTGTTGATTCAAATATTGATTTGAAGGTGGATTCCCTCAAGACAGAATTGGAGAAGTTTTATGGAAAGAATCCGTTGGAATCAAAAGATTTGTCTCGTATAGTGAACTCCAATCACTTTGGTCGTTTGATAAAGCTCTTGGATGATGAGAAGGTTTCTGGGAAGATTGTATTTGGAGGCGAAAAAGATGAAAGCAAACTGAGAATTAGCCCCACTATTCTATTGGATGTTCCCCGAAATTCCCTGATGATGCGTGAGGAGATATTTGGTCCTTTACTTCCTATCATCACGGTTGATAAACTGGAAGAAAGCTTTGATATCATCAATTCAGGAACAAAGCCTCTCGCTGCATATTTGTTTACAACCAACAGTAAGCTCAAGGGACAGTTTGTGATGAATATTTCTGCTGGAGGTTTGGTTATTAATGACACTGCATTACATCTTGCCATAAACACTCTACCTTTTGGTGGAGTTGGGGAGAGTGGAATCGGTGCATACCATGGGAAATTCTCATTTGATGCATTTAGCCACAAAAAAGCAATTCTTTATCGTAGTTTTCTCGGTGATGTGGCAATAAGGTACCCGCCATACACAAACACAAAGATGAGATTGTTGAAGGCTCTAATTGGTGGTGGCTTACTTGGTATAATTCGTGCCCTGTTTGGGTTGTCCTAG 738 0.4092 MAAAAKHLTPVVLELGGKSPVVVDSNIDLKVDSLKTELEKFYGKNPLESKDLSRIVNSNHFGRLIKLLDDEKVSGKIVFGGEKDESKLRISPTILLDVPRNSLMMREEIFGPLLPIITVDKLEESFDIINSGTKPLAAYLFTTNSKLKGQFVMNISAGGLVINDTALHLAINTLPFGGVGESGIGAYHGKFSFDAFSHKKAILYRSFLGDVAIRYPPYTNTKMRLLKALIGGGLLGIIRALFGLS 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181582g00001 245 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 13 20 IPR029510 GO:0016491
Stsc181582g00001 245 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 1 16 IPR016162 GO:0016491
Stsc181582g00001 245 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 183 200 IPR016162 GO:0016491
Stsc181582g00001 245 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 17 30 IPR016163 GO:0016620
Stsc181582g00001 245 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 31 182 IPR016163 GO:0016620
Stsc181582g00001 245 PANTHER ALDEHYDE DEHYDROGENASE 1 31 IPR012394 GO:0006081
Stsc181582g00001 245 SUPERFAMILY ALDH-like 1 219 IPR016161 GO:0016491
Stsc181582g00001 245 Pfam Aldehyde dehydrogenase family 32 202 IPR015590 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181582g00001 Stsc-Chr181582 5243 6735 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181582g00001 1 245 Aldehyde Dehydrogenase Gene Family AT1G44170 63.214 8.24e-124 356
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181582g00001 K00128 - gmx:100778722 402.134