Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181580g00003 ATGGCAGGAACATCATGGTTGGTGGACAAAAGTAGAATTGCAACCAAAATAAGGTGTGCATCAGGAGCTTCTGATCCTAATGAAGTTGTTTGGAAAAGCAATCCTACCAAGGCTTGCCCGAATTGTCATCATGCTATTGACAATAGTGATGTAGCTCAAGAGTGGCCTGGCTTACCAAAAGGGGTTAAATTTGATCCGTCCGATCAAGAGATAATCTGGCATTTGCTTGCAAAGGCTGGTGTAGGAAATTTAAAACCTCATCCTTTCATTGATGAATTTATTACTACTCTTGAAGTGGATGATGGAATTTGTTATACTCATCCTCAACATTTACCTGGTGTCAAGCAAGATGGAAGCGCTTCACATTTCTTCCACAGAGCAATAAAGGCCTATAATACTGGCACCCGAAAGCGTCGAAAAGTGCATGGTCAGGATGATGTCCGCTGGCACAAGACTGGAAAGACTAAACCAGTTGCGTTGGATGGGGTTCAAAAGGGTTGCAAAAAAATCATGGTTCTGTATACAAATGCGGCGAGAGGTGGAAAGTCAGAGAAAGCTAATTGGGTTATGCACCAATATCACCTAGGGACTGAAGAAGATGAAAAGGATGGAGAATATGTTATTTCTAAAGTGTTTTATAAAGAAGAGCAGGATATACCTAAATCTGAAGAAAGCAAGAATGCAACAGTTGTGAATGTAGATCCAGTCACTCCCAAATCTGTGACTCCTGAACCTCCTCGTAGTGAAAGGCAAGATTCGGATCTAGACCTGGATCGAGACCTAGGGCAAGAAGCCCTTGCTTTTCCTGAGATGGATTGCTTAGATGAAATTCAAGCTGACTGTGAAGAGTTTGCAAAAGCTAAGCCACCGGTACTGGAGAAACAAGAAAATGAAGGGATGGACAATATCGAAACTAATGCTTATGAAGCACAACCATGGTGGGATAGTGATTCGCAGAATCTATTAGACTCACAACAACTCGTCGAAGCATTAACTCTGTGCGAAGATATCCTTCACAGCCAATCTTCCAACAAAGGCGATGAAAATGATAAGAACCAAACTGGTCTATCTGTTTATGCTCATCTTGGACCAGAGCATCTGAAGAAGGATATTGAGGAGTGTCAGAAGCTAGCCCTTGATGCAAAAAATGCAGGACCGGAGCATCAGAAGGATATTGAAGAGGGCCAAGATCTTGACCATGACCTCGCAAATATAGAGCGTGATACTCCTCCTGAGCAACGACTGAGTCAGCTGGAATTCGGATCACAAGACAGCTATCGTTCCTGGGGTTTTCAAGGCGTAAACTAA 1308 0.4281 MAGTSWLVDKSRIATKIRCASGASDPNEVVWKSNPTKACPNCHHAIDNSDVAQEWPGLPKGVKFDPSDQEIIWHLLAKAGVGNLKPHPFIDEFITTLEVDDGICYTHPQHLPGVKQDGSASHFFHRAIKAYNTGTRKRRKVHGQDDVRWHKTGKTKPVALDGVQKGCKKIMVLYTNAARGGKSEKANWVMHQYHLGTEEDEKDGEYVISKVFYKEEQDIPKSEESKNATVVNVDPVTPKSVTPEPPRSERQDSDLDLDRDLGQEALAFPEMDCLDEIQADCEEFAKAKPPVLEKQENEGMDNIETNAYEAQPWWDSDSQNLLDSQQLVEALTLCEDILHSQSSNKGDENDKNQTGLSVYAHLGPEHLKKDIEECQKLALDAKNAGPEHQKDIEEGQDLDHDLANIERDTPPEQRLSQLEFGSQDSYRSWGFQGVN 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181580g00003 435 Pfam No apical meristem (NAM) protein 59 195 IPR003441 GO:0003677|GO:0006355
Stsc181580g00003 435 SUPERFAMILY NAC domain 43 214 IPR036093 GO:0003677|GO:0006355
Stsc181580g00003 435 Gene3D NAC domain 67 219 IPR036093 GO:0003677|GO:0006355
Stsc181580g00003 435 FunFam NAC domain-containing protein 8 67 218 - -
Stsc181580g00003 435 ProSiteProfiles NAC domain profile. 58 214 IPR003441 GO:0003677|GO:0006355
Stsc181580g00003 435 MobiDBLite consensus disorder prediction 218 257 - -
Stsc181580g00003 435 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 4 375 IPR044799 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181580g00003 Stsc-Chr181580 23402 27164 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181580g00003 23 234 NAC Transcription Factor Family AT1G28470 53.636 5.08e-74 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Stsc181580g00003 NAM 2e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181580g00003 - - adu:107491284 794.653