Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181576g00005 ATGGCGGTTCCGGGGAGGCGCAACGGCATAAACTCAGATGAAGAAGACAACAACCTCTTCGAAGAAGAAGGACTCGTCGAACCTGAATCCGACACACCTCCTCACCTACGTGACCTCTCCGCCGCCGCCCAGCTCGGCAACCTCTCCGCCCTCCGCACTGCCCTAGATAACTTGCAAGGGAGTATCGATGAGCCAGTCGAGGATGGGGATACTGCTTTACATTTGACTTGTTTGTATGGCCATTTGGAATGTGCCCAGCTACTTCTAGATAGAGGAGCAAACATGGAGGCCAAAGATGAAGATGGTGCGCTCCCTTTGCACGACGCTTGTGCAGGAGGTTATACAGATATAGTCCAGCTGCTATTTAACAGAGCTGGTGATGCAGAGATCATAAAAAGGATGCTAGAATCAGTTGATTCTGAGGGTGACACCCCTCTTCATCATGCAGCAAGAGGTGACCATGTTGATGTAATTAGGTTGTTGCTGTCTAATGGTGCTTCCCCCACGAAGCAAAACTTATATGGGAAGACCCCGGCAGAGTTACCAGATCAGGACACAGATGCTAGGAGGCTGTTGGAATCTACTACCACTGGCATGGAAACTTAG 606 0.5033 MAVPGRRNGINSDEEDNNLFEEEGLVEPESDTPPHLRDLSAAAQLGNLSALRTALDNLQGSIDEPVEDGDTALHLTCLYGHLECAQLLLDRGANMEAKDEDGALPLHDACAGGYTDIVQLLFNRAGDAEIIKRMLESVDSEGDTPLHHAARGDHVDVIRLLLSNGASPTKQNLYGKTPAELPDQDTDARRLLESTTTGMET 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181576g00005 201 Gene3D - 33 200 IPR036770 -
Stsc181576g00005 201 ProSiteProfiles Ankyrin repeat region circular profile. 141 167 - -
Stsc181576g00005 201 Pfam Ankyrin repeats (3 copies) 40 124 IPR002110 GO:0005515
Stsc181576g00005 201 MobiDBLite consensus disorder prediction 169 188 - -
Stsc181576g00005 201 ProSiteProfiles Ankyrin repeat region circular profile. 68 100 - -
Stsc181576g00005 201 ProSiteProfiles Ankyrin repeat profile. 101 133 IPR002110 GO:0005515
Stsc181576g00005 201 PANTHER SOWAH (DROSOPHILA) HOMOLOG 33 194 - -
Stsc181576g00005 201 FunFam BRCA1-associated RING domain protein 1 33 200 - -
Stsc181576g00005 201 ProSiteProfiles Ankyrin repeat profile. 141 173 IPR002110 GO:0005515
Stsc181576g00005 201 Pfam Ankyrin repeat 142 172 IPR002110 GO:0005515
Stsc181576g00005 201 PRINTS Ankyrin repeat signature 157 171 IPR002110 GO:0005515
Stsc181576g00005 201 PRINTS Ankyrin repeat signature 69 84 IPR002110 GO:0005515
Stsc181576g00005 201 SUPERFAMILY Ankyrin repeat 37 181 IPR036770 -
Stsc181576g00005 201 SMART ANK_2a 141 170 IPR002110 GO:0005515
Stsc181576g00005 201 SMART ANK_2a 68 97 IPR002110 GO:0005515
Stsc181576g00005 201 SMART ANK_2a 101 130 IPR002110 GO:0005515
Stsc181576g00005 201 ProSiteProfiles Ankyrin repeat profile. 68 100 IPR002110 GO:0005515
Stsc181576g00005 201 ProSiteProfiles Ankyrin repeat region circular profile. 101 130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181576g00005 Stsc-Chr181576 27907 29843 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181576g00005 61 184 Ion Channels AT2G25600 29.054 1.98e-11 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181576g00005 - - gmx:100527544 326.25