Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Stsc181576g00004 | ATGGCGGTTCCGGGGAGGCGCAACGGCATAAACTCAGATGAAGAAGACAACAACCTCTTCGAAGAAGAAGGACTCGTCGAACCTGAATCCGACACACCTCCTCACCTACGTGACCTCTCCGCCGCCGCCCAGCTCGGCAACCTCTCCGCCCTCCGCACTGCCCTAGATAACTTGCAAGGGAGTATCGATGAGCCAGTCGAGGATGGGGATACTGCTTTACATTTGACTTGTTTGTATGGCCATTTGGAATGTGCCCAGCTACTTCTAGATAGAGGAGCAAACATGGAGGCCAAAGATGAAGATGGTGCGCTCCCTTTGCACGACGCTTGTGCAGGAGGTTATACAGATATAGTCCAGCTGCTATTTAACAGAGCTGGTGATGCAGAGATCATAAAAAGGATGCTAGAATCAGTTGATTCTGAGGGTGACACCGTGAGTATTTATGTATCAATCCTCTTCATCATGCAGCAAGAGGTGACCATGTTGATGTAA | 492 | 0.498 | MAVPGRRNGINSDEEDNNLFEEEGLVEPESDTPPHLRDLSAAAQLGNLSALRTALDNLQGSIDEPVEDGDTALHLTCLYGHLECAQLLLDRGANMEAKDEDGALPLHDACAGGYTDIVQLLFNRAGDAEIIKRMLESVDSEGDTVSIYVSILFIMQQEVTMLM | 163 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Stsc181576g00004 | 163 | Gene3D | - | 12 | 152 | IPR036770 | - | |
Stsc181576g00004 | 163 | FunFam | BRCA1-associated RING domain protein 1 | 16 | 133 | - | - | |
Stsc181576g00004 | 163 | Pfam | Ankyrin repeats (3 copies) | 40 | 126 | IPR002110 | GO:0005515 | |
Stsc181576g00004 | 163 | SMART | ANK_2a | 68 | 97 | IPR002110 | GO:0005515 | |
Stsc181576g00004 | 163 | SMART | ANK_2a | 101 | 130 | IPR002110 | GO:0005515 | |
Stsc181576g00004 | 163 | PANTHER | SOWAH (DROSOPHILA) HOMOLOG | 33 | 125 | - | - | |
Stsc181576g00004 | 163 | ProSiteProfiles | Ankyrin repeat region circular profile. | 68 | 100 | - | - | |
Stsc181576g00004 | 163 | SUPERFAMILY | Ankyrin repeat | 37 | 136 | IPR036770 | - | |
Stsc181576g00004 | 163 | ProSiteProfiles | Ankyrin repeat profile. | 101 | 133 | IPR002110 | GO:0005515 | |
Stsc181576g00004 | 163 | ProSiteProfiles | Ankyrin repeat profile. | 68 | 100 | IPR002110 | GO:0005515 | |
Stsc181576g00004 | 163 | ProSiteProfiles | Ankyrin repeat region circular profile. | 101 | 130 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Stsc181576g00004 | Stsc-Chr181576 | 27881 | 29843 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Stsc181576g00004 | 13 | 133 | MAP Kinase Kinase Kinase | AT2G31800 | 30.435 | 2.25e-08 | 50.4 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Stsc181576g00004 | - | - | gmx:100527544 | 242.662 |