Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181576g00004 ATGGCGGTTCCGGGGAGGCGCAACGGCATAAACTCAGATGAAGAAGACAACAACCTCTTCGAAGAAGAAGGACTCGTCGAACCTGAATCCGACACACCTCCTCACCTACGTGACCTCTCCGCCGCCGCCCAGCTCGGCAACCTCTCCGCCCTCCGCACTGCCCTAGATAACTTGCAAGGGAGTATCGATGAGCCAGTCGAGGATGGGGATACTGCTTTACATTTGACTTGTTTGTATGGCCATTTGGAATGTGCCCAGCTACTTCTAGATAGAGGAGCAAACATGGAGGCCAAAGATGAAGATGGTGCGCTCCCTTTGCACGACGCTTGTGCAGGAGGTTATACAGATATAGTCCAGCTGCTATTTAACAGAGCTGGTGATGCAGAGATCATAAAAAGGATGCTAGAATCAGTTGATTCTGAGGGTGACACCGTGAGTATTTATGTATCAATCCTCTTCATCATGCAGCAAGAGGTGACCATGTTGATGTAA 492 0.498 MAVPGRRNGINSDEEDNNLFEEEGLVEPESDTPPHLRDLSAAAQLGNLSALRTALDNLQGSIDEPVEDGDTALHLTCLYGHLECAQLLLDRGANMEAKDEDGALPLHDACAGGYTDIVQLLFNRAGDAEIIKRMLESVDSEGDTVSIYVSILFIMQQEVTMLM 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181576g00004 163 Gene3D - 12 152 IPR036770 -
Stsc181576g00004 163 FunFam BRCA1-associated RING domain protein 1 16 133 - -
Stsc181576g00004 163 Pfam Ankyrin repeats (3 copies) 40 126 IPR002110 GO:0005515
Stsc181576g00004 163 SMART ANK_2a 68 97 IPR002110 GO:0005515
Stsc181576g00004 163 SMART ANK_2a 101 130 IPR002110 GO:0005515
Stsc181576g00004 163 PANTHER SOWAH (DROSOPHILA) HOMOLOG 33 125 - -
Stsc181576g00004 163 ProSiteProfiles Ankyrin repeat region circular profile. 68 100 - -
Stsc181576g00004 163 SUPERFAMILY Ankyrin repeat 37 136 IPR036770 -
Stsc181576g00004 163 ProSiteProfiles Ankyrin repeat profile. 101 133 IPR002110 GO:0005515
Stsc181576g00004 163 ProSiteProfiles Ankyrin repeat profile. 68 100 IPR002110 GO:0005515
Stsc181576g00004 163 ProSiteProfiles Ankyrin repeat region circular profile. 101 130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181576g00004 Stsc-Chr181576 27881 29843 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181576g00004 13 133 MAP Kinase Kinase Kinase AT2G31800 30.435 2.25e-08 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181576g00004 - - gmx:100527544 242.662