Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181576g00002 ATGTTCCAAAGAAGGTGCATTGTGTTAATAACAACATATGTATTAGGATGCATTGTTGTTGTTCATGGAGCTTCAAAAATGGTGAATCTCACACTCACACTCCCAGGGCACCATCCAAACCCTGAAGCTCTTGTTACACAAGTTCATAGTAAGATTAATGCTTCAATAGCAAGAAGGGAGATGTTATCATCATCATCATCATGCTTAACAGGGAACCCCATTGATGATTGCTGGAAATGTGACCCAAATTGGTCCCAAAACAGACAAAGGCTAGCCGATTGTGCAATTGGGTTCGGTCAAAACGCAAAGGGGGGAAAAGGTGGCCAGTTTTATATAGTAACCGATTCGTCGGACAACGACGCTGTAAACCCTAAACCCGGAACCCTAAGATACGCCGTGATCCAAAATGAGCCGCTTTGGATAGTGTTTCCTACTAACATGATGATTAAGCTTTCTCAAGAGCTCATATTCAATAGCTTCAAGACCATTGATGGGCGTGGTGCTGATGTTCACATTGTTGGTGGAGGCTGCATCACACTTCAATATATTAGCAATGTTATCATACATAACATTCACATTCACCATTGTCATCCTTCAGGTAATGCTATGGTGCGATCAAGTCCAGGGCACTACGGATACCGCACCGAATCGGACGGTGACGGGATATCCATATTCGGATCCCACGACATCTGGATCGATCACTGCACTCTATCTCGTTGCAAGGATGGGCTTATTGATGCAGTTATGGGCTCCACTGCCATTACTGTCTCCAACAACCACTTCTCTCACCACAATGACGTAATGCTATTGGGCCATAGTGACCACTACTTACCTGACTCAGCCATGCAGGTTACCATCGCCTTTAACCATTTCGGCGAGAAACTCGTCCAGCGCATGCCACGTTGCAGGCTAGGATACGTCCACATAGTCAACAACGACTACACTGCTTGGCAGATGTATGCGATCGGGGGCAGTGCATCCCCTACTATTAATAGTCAGGGGAACCGGTACACTGCTCCCGACGACTCATTTGCCAAGCAAGTGACAAAGCGGTTGGATGTCGGTGAAGGCGAGTGGACAGGGTGGAATTGGAGGTCAGAAGGGGACATGATGGTGAATGGAGCATTCTTTGTTCCATCTGGGGAAGGTGCTGAGGTTAAGTATGAAAAGGCTTATAGTGTTGAGCCTAAGTCTGCTGATCGCATTGCTTTGCTTACTATGTCTGCTGGAGTTCTTGGTGTTGCTAGGGACAATAACCTTGGCATGTGGACTAGAGGACCCAACGATGGTGGTAGTTATATTTCAAGAAACGGTCCAGAATTCACTGATGAAATGTCAAAGACTACAATGCTGTTTCCACCTTCGCATACTATCACATTTGTATCTGTTTTTCTTACAGTGTTGTGCTTGTTTACCCACACAATTACTCCCCTAATAACATTACTACTATAA 1452 0.4532 MFQRRCIVLITTYVLGCIVVVHGASKMVNLTLTLPGHHPNPEALVTQVHSKINASIARREMLSSSSSCLTGNPIDDCWKCDPNWSQNRQRLADCAIGFGQNAKGGKGGQFYIVTDSSDNDAVNPKPGTLRYAVIQNEPLWIVFPTNMMIKLSQELIFNSFKTIDGRGADVHIVGGGCITLQYISNVIIHNIHIHHCHPSGNAMVRSSPGHYGYRTESDGDGISIFGSHDIWIDHCTLSRCKDGLIDAVMGSTAITVSNNHFSHHNDVMLLGHSDHYLPDSAMQVTIAFNHFGEKLVQRMPRCRLGYVHIVNNDYTAWQMYAIGGSASPTINSQGNRYTAPDDSFAKQVTKRLDVGEGEWTGWNWRSEGDMMVNGAFFVPSGEGAEVKYEKAYSVEPKSADRIALLTMSAGVLGVARDNNLGMWTRGPNDGGSYISRNGPEFTDEMSKTTMLFPPSHTITFVSVFLTVLCLFTHTITPLITLLL 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181576g00002 483 PANTHER PECTATE LYASE 18-RELATED 36 415 IPR045032 GO:0030570
Stsc181576g00002 483 Gene3D - 71 413 IPR012334 -
Stsc181576g00002 483 SUPERFAMILY Pectin lyase-like 67 401 IPR011050 -
Stsc181576g00002 483 PRINTS Pollen allergen Amb family signature 298 317 IPR018082 -
Stsc181576g00002 483 PRINTS Pollen allergen Amb family signature 362 386 IPR018082 -
Stsc181576g00002 483 PRINTS Pollen allergen Amb family signature 391 414 IPR018082 -
Stsc181576g00002 483 PRINTS Pollen allergen Amb family signature 118 143 IPR018082 -
Stsc181576g00002 483 PRINTS Pollen allergen Amb family signature 218 239 IPR018082 -
Stsc181576g00002 483 PRINTS Pollen allergen Amb family signature 320 339 IPR018082 -
Stsc181576g00002 483 PRINTS Pollen allergen Amb family signature 154 170 IPR018082 -
Stsc181576g00002 483 PRINTS Pollen allergen Amb family signature 94 111 IPR018082 -
Stsc181576g00002 483 SMART amb_all 146 343 IPR002022 -
Stsc181576g00002 483 FunFam Pectate lyase 71 413 - -
Stsc181576g00002 483 Pfam Pectate lyase 155 335 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181576g00002 Stsc-Chr181576 14926 18206 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181576g00002 1 446 Polysaccharide Lyase AT3G53190 71.903 0.0 651
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181576g00002 K01728 - gmx:100815062 761.14