Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181575g00003 ATGGCCATGGAGCTTCACCGAGGAATGTTTTTAACACTTATAACGCTCTTCTTTTTCGTCCAGTTTGGTTTCAGCTCAACAACCACCACCATCACTGAAACTGAAAGGCACGCGTTGCTGCAACTTCGGAACTCGTTGGGGATTAGCCACAAAGACTGGCCCAGAAAAGCCGAACCATGCCGGAACTGGACCGGAGTTAAGTGCCAAATTGGTCGAGTCGTTGCCCTTAACATCACCGGTTTAAGGCGAACCACAGTCAATAATCTTCACTCTCACTCTCTCATCAACCTCACCTTCTTATCTTCGTTCATTGCTTCCGGTTTCGTCCTCAATTGTTCCATTCCCGAGTGGTTCGGACAGCGCCTTACCAAGCTACGAGTCCTTGATCTCGGGTCTTGTTCCCTCACGGGCTCGATTCCTTCTTCGCTCGGTGGTTTAACTGGGTTAACGTTTCTGTCACTTTCGGGCAATGAACTCACGGGTAGATTGCCTTCGGAGCTAGGAAGGTTGTCGGGGTTGACCGTTCTTGATCTTTCTGACAATTCCCTGACCGGAACAGTTCCCAATACAGTGTCTTCTCTCAAGAAACTTAAAAGGCTTGACCTTTCTCGTAATTTTCTATCTGGGTATGTTCCACCTGGCTTGGCTGCACTTTCTAATCTCCAAAGTTTGAATCTTTCAGACAATGCCCTCACTGGTTCACTTCCTCTTCATCTGGGTAACCTTTCTAGCTTGGTCACTCTTGATCTCAGCAAGAATTCTCTGTCTGGGTCATTGCCCAGTGTTTTGTTTTCCATCCTTTTTAAACTTGAAGTTCTCATTCTAAGTGACAATGCTTTTGATGGGACTATTCCTGCAACATTGTGGTCAGGGATCAACTTGCAATTTCTTGATTTATCCGGAAATAACCTCACTGGTCCCTTGCCAAAACTACCTAACTCCAGCAATGTTAATTATAGTGGTGCCACCTTTAATGTGTCCAATAATTTGTTGTATGGATCTCTTAATCACATTTTGATTAGCAAGTTTAAAGTAATTGACTTGTCCAATAACTATTTCCAAGGTGAGGTGCATATTGGTGTTTTTCATAATGATGTTACTGCTCTTGCTAGAAATTGCCTAAGGATGATTCAAAATCAGAGGAATTTTGGGGAATGTAGGGTGTTCTATGGCAAGAGGAGATTAGCCTTTAGTCTTGGCAGTGCTCAAGGACCTGCACAATCACCATTGCAAGATTCAAAGTCAAGAAACAACAAAGAAGTGGTATTCATTCTGGCAGGTATATTTGGTGGACTTGGCTTTATAGTGGTTCTTATATTGGTCCTCATAGTTCTGCTAGAAATTGGTGATAATCATAGCAGCAGCATCACAATCCAAAGACAAAAGGGGACGGCAAATGTGGGGCCTGATCATGAAGTTGAAAATCCTAAAGATCATGTGTTTGTAACTAGGTTAGGTGAATCTTTTACTTATGAGCAAATTCTCCAATTCACTGATAACTTTGCTGAAGCAAATTTAATCAAACATGGTCATTCTGGAGACTTATTCTTTGGATCCTTGGGAGGTGGAGTAAATGTTGTTGTAAAGAAGGTCAATTTGAATGTATTGAAGAAAGAATCATATATGGTAGAGTTAGGACTATTGAGTAAGGTTTCACATGCAAGATTGGTGCCAGTCTTGGGACATTGCTTGGAGAATGAGCATGAAAAATGCATAGTTTACAAATATATGCCAAATGGTGATTTGGCTACTTCTTTGCACAATGTCACCTTTTCAGAAGATAAATTTCAGTCTCTGGATTGGATCACAAGACTGAAAATCGCAACAGGAGCTGCTGAGGGTCTATCTTACCTACATGAGTTCAACCCTCCCTTTGTTCACAGAGATGTCCAAGCAAGCAGTATACTTCTTGATGATAAATTTGAAGTGCGGATTGGAAGTTTGAGCGAGGTTACTTCCCAAGGAGGTCTCCATCAGAGTGTCATCACCAGGATTTTCCGCAAGTCATCATCTTTTGATCAAGGCAATTCTGGTTCATCATTTGCAACTTGTTCTCAGGACGTGTACTGTTTTGGGAAGGTTTTACTAGAGCTCATTACTGGTAACATCGGTTTCAGTAATTCAGACGATGCTGCCACCAAAGAGTGGTTAGAGCACACACTGTCCTACATAAGTATATATAACAAAGATCAAGTGAGTAAGATTGTTGACCCAAATTTAATAGTAGATGATGATTTATTGGAAGAGGTATGGGCAATGGCAATTGTGGCCAGATCATGCCTGAATCACAAGCCTTCTAAACGCCCTCCTATGAGATATGTCCTAAAAGCATTGGAAAATCCCGTTAAGGTTGTCAGGGAAGAAAGTTATAGTTCATCAAGGTTAAGAACGACTTCATCCAGATCTTGGAGCTTTGCATTCTTTGGTAGCTGGAGACTGAGCTCATCAGAGATTTCTACAGTCACAGGAACAGGGCATACAAACAGAGAGGGTACCAATGGCTTTAAAGACTCAGGAAGAGTAGGTTCTCAAAGTAGTGTTGGATTGGATCTCTCATCTATCCATAAGAGGTCATCCAATGAAATTTTCCCCGAACCATTGGCAATGCAAGACATCGAGTGGCAAGATGGGCACTAA 2637 0.4206 MAMELHRGMFLTLITLFFFVQFGFSSTTTTITETERHALLQLRNSLGISHKDWPRKAEPCRNWTGVKCQIGRVVALNITGLRRTTVNNLHSHSLINLTFLSSFIASGFVLNCSIPEWFGQRLTKLRVLDLGSCSLTGSIPSSLGGLTGLTFLSLSGNELTGRLPSELGRLSGLTVLDLSDNSLTGTVPNTVSSLKKLKRLDLSRNFLSGYVPPGLAALSNLQSLNLSDNALTGSLPLHLGNLSSLVTLDLSKNSLSGSLPSVLFSILFKLEVLILSDNAFDGTIPATLWSGINLQFLDLSGNNLTGPLPKLPNSSNVNYSGATFNVSNNLLYGSLNHILISKFKVIDLSNNYFQGEVHIGVFHNDVTALARNCLRMIQNQRNFGECRVFYGKRRLAFSLGSAQGPAQSPLQDSKSRNNKEVVFILAGIFGGLGFIVVLILVLIVLLEIGDNHSSSITIQRQKGTANVGPDHEVENPKDHVFVTRLGESFTYEQILQFTDNFAEANLIKHGHSGDLFFGSLGGGVNVVVKKVNLNVLKKESYMVELGLLSKVSHARLVPVLGHCLENEHEKCIVYKYMPNGDLATSLHNVTFSEDKFQSLDWITRLKIATGAAEGLSYLHEFNPPFVHRDVQASSILLDDKFEVRIGSLSEVTSQGGLHQSVITRIFRKSSSFDQGNSGSSFATCSQDVYCFGKVLLELITGNIGFSNSDDAATKEWLEHTLSYISIYNKDQVSKIVDPNLIVDDDLLEEVWAMAIVARSCLNHKPSKRPPMRYVLKALENPVKVVREESYSSSRLRTTSSRSWSFAFFGSWRLSSSEISTVTGTGHTNREGTNGFKDSGRVGSQSSVGLDLSSIHKRSSNEIFPEPLAMQDIEWQDGH 878
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181575g00003 878 Gene3D Ribonuclease Inhibitor 31 189 IPR032675 -
Stsc181575g00003 878 PRINTS Leucine-rich repeat signature 173 186 - -
Stsc181575g00003 878 PRINTS Leucine-rich repeat signature 242 255 - -
Stsc181575g00003 878 Gene3D Transferase(Phosphotransferase) domain 1 577 798 - -
Stsc181575g00003 878 MobiDBLite consensus disorder prediction 822 844 - -
Stsc181575g00003 878 ProSiteProfiles cAMP/cGMP binding motif profile. 506 559 IPR000595 -
Stsc181575g00003 878 ProSiteProfiles Protein kinase domain profile. 501 783 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181575g00003 878 Pfam Protein tyrosine and serine/threonine kinase 509 777 IPR001245 GO:0004672|GO:0006468
Stsc181575g00003 878 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 213 308 - -
Stsc181575g00003 878 FunFam Putative LRR receptor-like serine/threonine-protein kinase 577 799 - -
Stsc181575g00003 878 Pfam Leucine rich repeat N-terminal domain 34 68 IPR013210 -
Stsc181575g00003 878 Gene3D Phosphorylase Kinase; domain 1 465 576 - -
Stsc181575g00003 878 FunFam Piriformospora indica-insensitive protein 2 114 212 - -
Stsc181575g00003 878 SUPERFAMILY Protein kinase-like (PK-like) 480 778 IPR011009 -
Stsc181575g00003 878 SUPERFAMILY L domain-like 35 314 - -
Stsc181575g00003 878 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 16 358 - -
Stsc181575g00003 878 SMART LRR_typ_2 170 193 IPR003591 -
Stsc181575g00003 878 SMART LRR_typ_2 218 241 IPR003591 -
Stsc181575g00003 878 SMART LRR_typ_2 122 145 IPR003591 -
Stsc181575g00003 878 SMART LRR_typ_2 146 169 IPR003591 -
Stsc181575g00003 878 SMART LRR_typ_2 242 266 IPR003591 -
Stsc181575g00003 878 SMART LRR_typ_2 194 217 IPR003591 -
Stsc181575g00003 878 SMART LRR_typ_2 267 291 IPR003591 -
Stsc181575g00003 878 FunFam Predicted protein 471 576 - -
Stsc181575g00003 878 ProSiteProfiles Leucine-rich repeat profile. 293 315 IPR001611 GO:0005515
Stsc181575g00003 878 Gene3D Ribonuclease Inhibitor 190 379 IPR032675 -
Stsc181575g00003 878 Pfam Leucine rich repeat 172 231 IPR001611 GO:0005515
Stsc181575g00003 878 Pfam Leucine Rich Repeat 124 146 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181575g00003 Stsc-Chr181575 10188 13985 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181575g00003 34 667 Miscellaneous Gene Families AT2G16250 45.045 1.42e-173 517
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIV Stsc181575g00003 PK_Tyr_Ser-Thr 4.3e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181575g00003 - - pcin:129301220 877.856