Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181572g00002 ATGGATGATGAAGTTATTCAGCGAGTGTTCCACGAAGGAGGACGCGATTTCTTCCAGCAGCAACCTTCTTCAACTTCCTCCATCCTTCAATCTCTCCCTCTCCATGTGTCTTTTGATCATGGCTATTATTTACTGGTAAAATCAGTTCAAGAACTACGGGAAAAAAAGGAAGGCCTTGTTACAGTTGGAATTGGTGGTCCTAGTGGCTCTGGAAAAACAAGCTTAGCAGAAAAGGTGGCATCTGTTATTGGTTGTACTGTGATATCAATGGAGAATTATCGTGATGGAGTTGATGAAGGGAGTGATCTGGATTTTATAGATTTCACTAGCTTGATCAAGAATCTTGAGGATTTGATAAAAGGTGATGATACATTAGTCCCAGTGTTTGATTATCAACAAAAGAGACGTGTTGGCTATAAAGCCATAAAGAGTACTGCATCTGGGGTGATAATAGTTGATGGAACGTATGCATTACATGCAAAACTGCGTTCTTTACTGGATATTCGAGTTGCTGTGGTTGGTGGTGTTCATTTTAGTCTGCTTTCTAAAGTTCGCTATGACATTGGAGATTCTTGTTCACTGGATAGCCTTATAGATAGCATTTTTCCATTATTTAGGAAGCACATTGAGCCAGATCTTCATCATGCACAGATCAGAATTAACAACAGCTTTGTATCATCATTTAGAGAGGCAATCTACAAGCTTAAATGCAGAAGTGAGTCTCCAGATGGATATTCAAGTTCTGCATTTCAAGGAAATGAAGCCCAAACAGACAATTTTATTGAAATGTACCTTAGACCACCTTCAGCTAGTGAAGAAGCAAGGATAAATGATTGGATCAAAGTGCGGCAGTCTGGAATTAGATATTATTTATCACTTGGTGACCAAAGAATTGTTGATAAAAATTTCATTATCAGGCCTAAAGCAGAGTTTGAGGTTGGACGAATGACATTGGGTGGATTGTTGGCCCTTGGGTACACAGTTGTTGTTAGTTATAAACGCGCATCCACAACTGTTGATAATGGCAAGGTTTCAGTGTCTTTTGAAACCATTGATGCTCTTGATGAGACATTCATGGTGATGAGAGGAACTAATAGGAAGACTGTTGGAACAGAAGCAATGAGGATTGGTATCAATGGACCTTGGATTACTAAATCATATCTTGAAATGATCCTTGAGAAAAAAGGTGTTCCTCGTCTTAGTACACCACCACTGGTGACTAATACACCTGTGCCTGGTAGTCAAGACACAGCAATTGTTGCACCAAAACCAATTCGTGTTACTCCTGACCTTGTTACGGGATTGGAGGATTTGTCTCAGCCTTGGACTCGGTCCCCAACAAAATCTAAAATGGAACCTGTTGTGGCAACATGGCATTTTTTATCTTCAGATTCCTCCCAACCTGACAACTCAGTACTAGACCCTTCATCTTTCAGGGATACCATTAGGCTTGCTCCAATGCCCGAGTCATATGACCTGGATAGGGGATTGCTTTTGGCTGTTCAAGCCATACAAGCTTTGTTGGAGAATAAAGGTGTCCCAGTCATAGTTGGAATTGGAGGTCCAAGTGGATCTGGAAAGACTAGTTTGGCCCATAAAATGGCAAATATTATTGGATGTGAAGTAGTTTCCCTTGAAAGCTATTATAAACAAGTAAAGGATTTCAAATATGATGACTTCAGCTCACTTGACTTATCTTTGCTATCAAAGAATATTAGTGACATAAAGAAAGGCCGAAGAACAAAAGTACCAATATTTGACTTGGAAAGTGGTGCTCGGAGTGGCTTCAAGGAACTTGAAGTTTCAGAAGATTGTGGAGTGGTAATATTTGAAGGTGTCTATGCTTTGCATCCTGATATTCGAGTATCACTTGATTTTTGGATTGCTGTTGTAGGAGGAGTTCATTCACATTTACTTTCACGAGTTCAAAGGGATAAGAGTAGAGTGGGTTGTTTTATTTCCCAGAATGAGATCATGATGACAGTGTTTCCAATGTTCCAGCAGTACATTGAACCTCATCTTGTTCATGCACATCTTAAAATTCGAAATGATTTTGATCCTGTGCTTTCTCCTGAGAGTTCATTGTTTGTGTTGAAGAGTAACAAGAAAGTAGCATATCAAGATATTCTTGCAATTCTTGACCGAGCAAAATTTTGCAGTTCTGTTCAGAAATTTATTGATATTTATATAAGGCTGCCTGGGATCCCTTCTAACGGGCAGTTGACAGAAAGTGATTGTATTCGAGTCAGAATATGTGAAGGAAGATTTGCCTTGCTGATACGTGAGCCTATTAGAGAAGGAAACTTCATCATTCAGCCTAAAGTGGATTTTGATATCGGCATTAGTACAGTTGCTGGTCTTCTTAATCTTGGGTACCAGGCAGTTGCTTACATTGAAGCCTCCGCATTCATCTATCAGGATGGAAAGATTCTAATTGAGGTTGATCATCTACAAGATGTCCCTGGCCCATACATTCAGATCAAGGGTGTTAATAAAGATGCAGTGGCAGCAGCAGGTTCAATGCTTCAATTGGACGGCTCATATACAACTAAGAGTTATCTTGAAATAATTTTAGAAAGACTACCAACAATAGAAAGAACTTCTGGTGGGATTAACTCTCAGCAATCAGCAAGGCTTCAAGAGATTGTAGAATTTATTCAGTCTCAGGGGTGTAGCTCTGCTTCAGAATCGTCACAAAGCAGGGGAGTCTCTCCAATCGAAGGGGCTATTGAGGAGATGCAATCAAGGATTAGAAGGCTTGAGAGGTGGCTTGCTATAAACACGGTTCTATGGACATTTCTAATGTCTGCCCTTGTTGGTTTTTCACTGTATCAAAGGAGGCGTCAATGA 2850 0.4 MDDEVIQRVFHEGGRDFFQQQPSSTSSILQSLPLHVSFDHGYYLLVKSVQELREKKEGLVTVGIGGPSGSGKTSLAEKVASVIGCTVISMENYRDGVDEGSDLDFIDFTSLIKNLEDLIKGDDTLVPVFDYQQKRRVGYKAIKSTASGVIIVDGTYALHAKLRSLLDIRVAVVGGVHFSLLSKVRYDIGDSCSLDSLIDSIFPLFRKHIEPDLHHAQIRINNSFVSSFREAIYKLKCRSESPDGYSSSAFQGNEAQTDNFIEMYLRPPSASEEARINDWIKVRQSGIRYYLSLGDQRIVDKNFIIRPKAEFEVGRMTLGGLLALGYTVVVSYKRASTTVDNGKVSVSFETIDALDETFMVMRGTNRKTVGTEAMRIGINGPWITKSYLEMILEKKGVPRLSTPPLVTNTPVPGSQDTAIVAPKPIRVTPDLVTGLEDLSQPWTRSPTKSKMEPVVATWHFLSSDSSQPDNSVLDPSSFRDTIRLAPMPESYDLDRGLLLAVQAIQALLENKGVPVIVGIGGPSGSGKTSLAHKMANIIGCEVVSLESYYKQVKDFKYDDFSSLDLSLLSKNISDIKKGRRTKVPIFDLESGARSGFKELEVSEDCGVVIFEGVYALHPDIRVSLDFWIAVVGGVHSHLLSRVQRDKSRVGCFISQNEIMMTVFPMFQQYIEPHLVHAHLKIRNDFDPVLSPESSLFVLKSNKKVAYQDILAILDRAKFCSSVQKFIDIYIRLPGIPSNGQLTESDCIRVRICEGRFALLIREPIREGNFIIQPKVDFDIGISTVAGLLNLGYQAVAYIEASAFIYQDGKILIEVDHLQDVPGPYIQIKGVNKDAVAAAGSMLQLDGSYTTKSYLEIILERLPTIERTSGGINSQQSARLQEIVEFIQSQGCSSASESSQSRGVSPIEGAIEEMQSRIRRLERWLAINTVLWTFLMSALVGFSLYQRRRQ 949
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181572g00002 949 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 502 684 IPR027417 -
Stsc181572g00002 949 CDD UMPK_like 61 223 - -
Stsc181572g00002 949 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 59 172 IPR027417 -
Stsc181572g00002 949 PRINTS Uridine kinase signature 541 552 - -
Stsc181572g00002 949 PRINTS Uridine kinase signature 635 645 - -
Stsc181572g00002 949 PRINTS Uridine kinase signature 514 531 - -
Stsc181572g00002 949 SMART AAA_5 58 208 IPR003593 GO:0016887
Stsc181572g00002 949 SMART AAA_5 513 657 IPR003593 GO:0016887
Stsc181572g00002 949 Gene3D - 60 238 IPR027417 -
Stsc181572g00002 949 CDD UMPK_like 516 684 - -
Stsc181572g00002 949 Gene3D - 698 861 - -
Stsc181572g00002 949 Pfam Phosphoribulokinase / Uridine kinase family 516 681 IPR006083 GO:0005524|GO:0016301
Stsc181572g00002 949 Gene3D - 513 690 IPR027417 -
Stsc181572g00002 949 SUPERFAMILY CYTH-like phosphatases 712 856 IPR033469 -
Stsc181572g00002 949 PANTHER URIDINE KINASE 492 876 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181572g00002 Stsc-Chr181572 7699 18901 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181572g00002 509 672 PRT Gene Family AT1G55810 25.281 3.41e-09 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181572g00002 - - gmx:100778905 1651.34