Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181570g00006 ATGGAGGACAAAGAAGATGACAACAATAACAACAACAACCAAGATCATCATAACCACCCAAAAGAAGAGTCAATAGTAACAAGAAAACACAATACTATTGGAGGCGGAAGCGGCGGCCGCAGCGATAGTAGGTTGAAGAGAGATGAGTGGAGTGAAGGAGCAGTTTCCATTCTTCTTGAAGCATACGAATCAAAATGGGTTCTGAGAAACAGAGCAAAACTCAAAGGCCATGACTGGGAAGACGTTGCAAGACACGTGTCATCAAGAGCCAACTCCACCAAATCACCAAAGACACAGACACAGTGTAAGAACAAGATTGAATCCATGAAGAAACGGTACAGATCAGAGTCTGCTACCGCTGATGCCTCATCTTGGCCGTTATATTCGCGCCTTGATCTTCTCTTGCGTGGGACCGGGCCTGTGTCCGGGCCCGTGTCGTCCACGCTGGCACCACCACTGCCACTGCCACCAGCACTGCATGCAGCGCCAGTAACGGTGGCAGTGGCTTCAACTGCAGCGACTGGCTCTCATCAGTCGCTGCACTTTAGCAATAACCAACCGGTGATGCTGTTGGAGGCGCCGCCGTCGTCACTGGCTGTGTCTCAAGCTCTCCATCAACCACCGCCGCCACCTGGTCTTGGTGCTCCTCCACCACTTGCCACCACCGCGCAAAACTCGCATGGATCCAATGGCGTTGAAAGATTGATAGCCAAGGAAGATGATGGGTTGGGAACTAATAAGTCATCTGATCATCTATCTAATAAGAATCCATTAGACACTGATAGCAGCACACCAGCACTCTATAGTGAAAAGGATAAGCTAAGATGCAACAAGAGGAAGATGAAGATGGAGAGCAACAAGCAGCAGCAACGACGGCGGAATAAGGAAGACATGGAGATAGCTGGAAGCATAAGGTGGCTTGCTGAAGTTGTGGTCAGATCAGAGCAAACAAGAATGGACACAATGAAGGAGATTGAAAAGATGAGAGTCGAAGCCGAGGCCAAGCGCGGCGAAATGGATCTCAAGAGAACTGAAATCATTGCCAATACGCAGTTAGAGATCGCTCGGATCTTTGCGAGCGCCAATAACAAAGGTGTGGATTCATCGTTGAGAATCGGTAGAAACTAA 1128 0.4902 MEDKEDDNNNNNNQDHHNHPKEESIVTRKHNTIGGGSGGRSDSRLKRDEWSEGAVSILLEAYESKWVLRNRAKLKGHDWEDVARHVSSRANSTKSPKTQTQCKNKIESMKKRYRSESATADASSWPLYSRLDLLLRGTGPVSGPVSSTLAPPLPLPPALHAAPVTVAVASTAATGSHQSLHFSNNQPVMLLEAPPSSLAVSQALHQPPPPPGLGAPPPLATTAQNSHGSNGVERLIAKEDDGLGTNKSSDHLSNKNPLDTDSSTPALYSEKDKLRCNKRKMKMESNKQQQRRRNKEDMEIAGSIRWLAEVVVRSEQTRMDTMKEIEKMRVEAEAKRGEMDLKRTEIIANTQLEIARIFASANNKGVDSSLRIGRN 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181570g00006 375 MobiDBLite consensus disorder prediction 247 265 - -
Stsc181570g00006 375 MobiDBLite consensus disorder prediction 266 297 - -
Stsc181570g00006 375 MobiDBLite consensus disorder prediction 241 297 - -
Stsc181570g00006 375 MobiDBLite consensus disorder prediction 1 47 - -
Stsc181570g00006 375 Gene3D - 50 115 - -
Stsc181570g00006 375 MobiDBLite consensus disorder prediction 199 228 - -
Stsc181570g00006 375 Pfam Myb/SANT-like DNA-binding domain 47 133 IPR044822 -
Stsc181570g00006 375 Coils Coil 271 291 - -
Stsc181570g00006 375 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 20 361 IPR044823 -
Stsc181570g00006 375 MobiDBLite consensus disorder prediction 1 28 - -
Stsc181570g00006 375 FunFam Trihelix transcription factor ASIL2 50 115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181570g00006 Stsc-Chr181570 50161 54082 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181570g00006 36 357 Trihelix Transcription Factor Family AT3G14180 24.928 1.13e-20 91.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Stsc181570g00006 Myb_DNA-bind_4 2.1e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181570g00006 - - adu:107471869 545.043