Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181567g00010 ATGGATCAAGCTGCAAGTGAGGGGAGTGGTGAGGTAATGGATCCTGTTCATGAAAGGGTTGATGATAATTTGAGTCATGTAGCTGAAAGGGATGCCATTGATGCAGTAGGTAGGGGTAGCTTGGTTGAGAGGGCTACTATAAGTGGGGAAGTTGGAACTTCAGAACAAAAGGGTAAGGATTTGGATTCAGAGAAGGAGTTAAAGGTGGAGCCTGAGGGAGTTGAGGGTGAGAAGAAGTGTGATCACCAGAAAAACAGTGATACAATGTCTCAGGTTGATCAAGGAACTAGTTATAATTCAAGCAGTTTGGTTAATCAGCAAGTGCTTGAGACTGTGATTGTAATAGAGCCTGTTCAGAGTGAGTGTGTTAATGGTGATCGTAGGAAGTTGGAGCTGAAAGTAAATGAATCAGGGTTGGGCAAAGTATCTGTTAAAGCCCCCAAAGGGGTTTCCGAAACAGATAAGAATTCGTGTGTGATTGATATAAAGCGTGGCAACCCCAAACGGTTTAGTGAGAGCTCTGAAGGTGAAAGGATTTGTAGGATTTGCCATCTTGCTTCAGGGCGGCCATCAGATGCATCAGCTGTTGGCACTGCCAATGGTGCTACTAGTGATGATTTGATTCCGCTTGGTTGTGCATGTAAGGATGAGCTTGGCATTGCACATATTCATTGTGCTGAGGCCTGGTTCAAGCTTAAAGGAAATAGATTATGTGAAATATGTGGCGAGACTGCGAAAAACGTGTCGGGTGTTGCTGATACCGGATTCATGGAAGAGTGGAACGAAGGGAGATTCATGGACCACGATAACACATCACGCAGGTTTGGTGGGTGTTGGCGAGGACAGCCATTTTGTAACTTCTTGATGGCATGCCTTGTAATTGCTTTTGTTCTTCCATGGTTTTTTCGTGTAAATATGTTCTAG 924 0.4437 MDQAASEGSGEVMDPVHERVDDNLSHVAERDAIDAVGRGSLVERATISGEVGTSEQKGKDLDSEKELKVEPEGVEGEKKCDHQKNSDTMSQVDQGTSYNSSSLVNQQVLETVIVIEPVQSECVNGDRRKLELKVNESGLGKVSVKAPKGVSETDKNSCVIDIKRGNPKRFSESSEGERICRICHLASGRPSDASAVGTANGATSDDLIPLGCACKDELGIAHIHCAEAWFKLKGNRLCEICGETAKNVSGVADTGFMEEWNEGRFMDHDNTSRRFGGCWRGQPFCNFLMACLVIAFVLPWFFRVNMF 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181567g00010 307 MobiDBLite consensus disorder prediction 55 86 - -
Stsc181567g00010 307 SMART ringv_2 179 242 IPR011016 GO:0008270
Stsc181567g00010 307 SUPERFAMILY RING/U-box 175 244 - -
Stsc181567g00010 307 MobiDBLite consensus disorder prediction 47 98 - -
Stsc181567g00010 307 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 165 253 IPR013083 -
Stsc181567g00010 307 ProSiteProfiles Zinc finger RING-CH-type profile. 172 248 IPR011016 GO:0008270
Stsc181567g00010 307 PANTHER ZINC FINGER, RING-CH-TYPE 56 307 - -
Stsc181567g00010 307 Pfam RING-variant domain 180 241 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181567g00010 Stsc-Chr181567 40190 42111 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181567g00010 160 306 C3H Transcription Factor Family AT5G05830 40.000 4.52e-32 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181567g00010 - - gmx:100791129 398.282