Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181567g00009 ATGCATAATGAAGCACTCTGTGGCAACCCTCGCTTACAAGTCCCTCCATGTGATAAACAAGGTGGCAAAAGATCAAGGGTCAAGCTGATTTTAGCCATTTGCATACCTCTTGTAATACTGTCAATCATTTTGGTTGTTGCATGCATAGTTGTTCGCCGACGTAGAACAAAAGATGTTGAGAATCCAGTTGAAAAGAATTCATCAGACATGGGAGCAGCAAAGAGGATTTCCTATTATGAACTTGTGCAGGCTACCAATGGATTTAATGAGAGTAACTTAATCGGAAAGGGAGGTTTCGGTTCTGTGTATCAAGGCTTGCTCTCCGGTGGGATGACGGTTGCAGTGAAAGTGCTTAACGTGGACTTGGAAGCAACTTCCAAGAGCTTTGATGCAGAATGCAACGCAATGCGCAACTTACGCCATAGAAATCTTGTTAAGGTTATTACCAGTTGCTCAAATGATGATTTCAAATCCTTGGTGATGGAGTTCATGCCAAATGGAAGCCTGGACAAATGGTTGTATTCACATAACTATTGTCTAGATTTCTTGCAAAGGTTGAACATAATGTTGGATGTGGCATCTGCATTGGAATATCTGCATTATGGTTCTTCAATACCAGTTGTTCATTGTGACCTGAAGCCTAGTAATGTTTTACTGGATGAAGATATGGTTGCACATGTCAGTGACTTTGGGATTGCTAAGCTCTTGGATGAGGGACAATCTAAAACACATACTGAGACCTTGGCTACACTTGGCTACCTTGCACCAGAGTATGGATCTACAGGAACTGTGTCTATTAAAGGAGATGTGTACAGTTATGGAATTGTACTAATAGAAGTTTTCACAAGGAAAAAGCCAACAGATGATATGTTTGCAATGGGATTAAGCATGAAAAGTTGGATTAGTGAATCATTATCCAACTCAGTCATGGAGGTTGTGGACTCCAATTTAGNNNNNNNNNNGACATGGTGCTCAAAGTGA 981 0.4047 MHNEALCGNPRLQVPPCDKQGGKRSRVKLILAICIPLVILSIILVVACIVVRRRRTKDVENPVEKNSSDMGAAKRISYYELVQATNGFNESNLIGKGGFGSVYQGLLSGGMTVAVKVLNVDLEATSKSFDAECNAMRNLRHRNLVKVITSCSNDDFKSLVMEFMPNGSLDKWLYSHNYCLDFLQRLNIMLDVASALEYLHYGSSIPVVHCDLKPSNVLLDEDMVAHVSDFGIAKLLDEGQSKTHTETLATLGYLAPEYGSTGTVSIKGDVYSYGIVLIEVFTRKKPTDDMFAMGLSMKSWISESLSNSVMEVVDSNLXXXXTWCSK 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181567g00009 326 SUPERFAMILY Protein kinase-like (PK-like) 70 298 IPR011009 -
Stsc181567g00009 326 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 164 323 - -
Stsc181567g00009 326 FunFam Serine-threonine protein kinase plant-type 68 163 - -
Stsc181567g00009 326 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 7 318 - -
Stsc181567g00009 326 ProSitePatterns Protein kinases ATP-binding region signature. 94 116 IPR017441 GO:0005524
Stsc181567g00009 326 SMART serkin_6 88 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181567g00009 326 Gene3D Transferase(Phosphotransferase) domain 1 164 325 - -
Stsc181567g00009 326 Pfam Protein kinase domain 89 288 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181567g00009 326 ProSitePatterns Serine/Threonine protein kinases active-site signature. 207 219 IPR008271 GO:0004672|GO:0006468
Stsc181567g00009 326 ProSiteProfiles Protein kinase domain profile. 88 326 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181567g00009 326 Gene3D Phosphorylase Kinase; domain 1 69 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181567g00009 Stsc-Chr181567 38603 40139 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181567g00009 3 317 Receptor kinase-like Gene Family AT3G47570 41.449 3.63e-81 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Stsc181567g00009 Pkinase 2e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181567g00009 - K13420 mtr:25481440 470.7