Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181567g00008 ATGGTATGCTTAGTTCTGTGTGAAGTGAACATCAGCACTGATGATGAACATGCTCTTCTTGCATTCAAGTCTTCCATTAGTTCAGACCCCAAAAATCTCATTCTTAGTAATTGGTCAACCTCATCATCTTCTTCTTCTTATTCTTCTCTGTGCAATTGGGTTGGTGTTACATGTGATTTGGGTAATGGAAGAGTGAAGTCTTTGAATCTCAGCAACATGGGGCTTGTAGGTACCATTCCTCCACAAGTGGGGAGCCTCTCATTCCTTGAGGAGCTTGATCTCAAAGGAAACAGCTTCCATGGTGAGTTGCCACATGAGTTGTATCAGTTACAACAACTGAAGTTGCTCAACCTTAGTTACAACAACTTTGATGGCTTCATTTTGAACTCAATTTCCAACTTGTCTAAGTTGGTGTACTTGGACTGTTCATCAAGTTTCAGAAAAGGATCCAATGCTATTCTACCAGTCATTGGACAGCTTCAACATTTGAAGGTTCTGAGTTTTGAGAACAACTCTCTTTCAGGATCCATTCCACCAGAGGTATCTAATCTCTCTTCACTTGAAGTAATCAACCTTGGTTATAACTCCTTATCAGGTGAGATTCCAGTGTCTCTGTTGAACATCTCTTCACTGAGGCATTTCAGTGCTGGCTACAACAATTTTAATGGAACTCTCCCAAATGAGCTGTGTCATCAGGTTCCTCAACTTCAATACCTTCTTTTGGATTTTAATCAATTTGAGGGTACCATTCCAGCATCAATTGGTAACTGCACATCTCTTGTACTATTAAGTTTATCCAATAACTTCTTCACAGGTCCAATACCAATGGAGATTGGAAATCTTGGTAAATTTGAGCATCTTGCTGTGGGATTTAACAATTTGAGTGGACCAATTCCACCAAAGATCTTCAACATTTCAACATTGAAATACTTGTATCTTTCATACAATTCTCTATCAGGTAATATACCATCACAAATGGGGTATACTCTGCCTAACTTGGTGCAGCTACACTTAACTGGGAACAAGCTTGTTGGAAGCATTCCAAATGGTTTATTCAATGCTACTTTGCTCACTAAAATCGACTTGAGTGAGAACCAATTCAATGGACTCATGCCCACTGGATTTCGATATCTAACAATCCTTGAAGTTCTTCATATAGGTGGCAATAATCTGACAACTCATGATGATTCTCATGAACTTGAATTCCTCACATCCTTGACAAGTTCTACACAGTTGAAGCGTATTGTAGTAACTGGCAATCCTTTAAAGGCTAGTCTTCCTAAGTCGATTGGAAACTTATCAAAGTCTCTAGAACTTTTTCAAGCAGATCACTGCAGAATTTATGGAAAAATTCCATTGGAAATAGGAAACATAAGTGGCTTGTTGAATTTAAATTTGTATGGGAATGATATAAGCGGACCGATTCCTACCACAATTAAAGGGTTACAGAAGCTTCAGTCTTTGAATTTGAGCTACAATGAATTGCAGGGATCCATCATAGATGAGCTTTGTGAAATTGGGAGCTTAAGTGTGTTGTCTCTATCAAGTAATAAGCTATCTGGAGTTATACCAACATGCTTGGGAAATATGGCTTCTCTTAGAATGGTTTACATGGATTCTAACAAACTGATCTCAGAGATACCATCTTCTTTTTGGAATCTCAAGGATGTCTTAGAGGTAAATTTATCATCTAATGCTCTAGTTGGAGAACTTCCATCTGATATAGCAAGACTGAGAGCTCTTGTACTGTTGGATCTATCAAAAAATGAGTTTTCAGGCAACATTCCAATAACCATAAGTTCCTTGGGAACTCTGCAAAATCTGTACTTGGCAAGCAACACATTTCAAGGGTCCATTCCTCCGTCATTCGGCGAAATGGTAAGCTTAAGCTCACTGGACTTGTCTCAAAATCTTTTGTCAGGTGTGATTCCAAAATCCTTAGAGTCACTTACTTATCTCAAATACATCAACTTGTCTTATAATAAATTGCAAGGAGAGATTCCTAATGGTGGACCATTTGTAAATTTCACTGCTCAATCTTTCATTCATAATGCAGCACTTTGTGGTAGTAATCCTCACCTATTGGTCCCTCCATGTGCTAAGAAAGATAGGCAAAGATCAAGGACAATGTTGCTTTTGGTCAAATGCGTTCCACCTATAATTGTGTCAATCATTTTGGTTGTTATATTCATAGTAGTTCTGCATTATAAGAGAAAAAAAGTTAAGACTCATCTTGAGAGAAATTTATCAACTTTGGAAACAATGAGGCTTTCCTACTATGAACTTGTAAGAGCAACTAATGGATTTAGTGAGAGTAATTTGATTGGAAAGGGTGGATTTGGTTCTGTATATCAAGGGAAGCTCTCTAGTGGGTTGATAGTTGCAGTTAAAGTGCTTGATTTGGACTTGGAAGAAACATCAAGGAGTTTTGAAGTGGAATGCAATGCAATGCGAAATCTTCGGCATCGAAATCTTGTTAAGATTATTAGCAGCTGTTCAAATGATGATTTCAAATCTCTGGTGATGGAGTTTATGTCAAATGGAAGTCTTGACAAATGGTTGTACTCACATGACTATTGTTTAGATTTCTTTCAAAGGCTGAGTATAATGCTAGATGTGGCTTCTGCATTGGAATATCTGCATCATGGTTTTTCAATTCCTGTAGTTCATTGTGACTTGAAGCCTAGTAATGTTCTGTTAGATGAAGGAATGGTGGCACATGTGAGTGATTTTGGCATTGCTAAACTCTTGGATAAGGGACAATCTAAAGTTCACACAAAGACATACTTAGCCACTGTTGGCTATGTTGCACCAGAGTATGGATCTATGGGAATTATTTCTGTCAAAGGAGATGTGTATAGCTATGGAATTATGTTAATGGAAGTCTTCACAAGAAAGATGCCTACAGATGATATGTTTGCTGCAGAATTGAGCTTGAAAAGTTGGGTTGAAGAATTACTGCAAAATTCAATCATAGAAGTTGTGGATTACAATTTAGTACAATTATATGGTGAACAAATTGATAATCTATTGCCTCATATATCATCAATATTAGAATTAGCTTTGAGTTGTTGTGTAAATCCACCTGAAGAACGAATTACAATGACAGATGTTGTTGTGTCATTAACCAAGATCAAGAATTTGTTCACACAAGAAAACTAA 3162 0.3735 MVCLVLCEVNISTDDEHALLAFKSSISSDPKNLILSNWSTSSSSSSYSSLCNWVGVTCDLGNGRVKSLNLSNMGLVGTIPPQVGSLSFLEELDLKGNSFHGELPHELYQLQQLKLLNLSYNNFDGFILNSISNLSKLVYLDCSSSFRKGSNAILPVIGQLQHLKVLSFENNSLSGSIPPEVSNLSSLEVINLGYNSLSGEIPVSLLNISSLRHFSAGYNNFNGTLPNELCHQVPQLQYLLLDFNQFEGTIPASIGNCTSLVLLSLSNNFFTGPIPMEIGNLGKFEHLAVGFNNLSGPIPPKIFNISTLKYLYLSYNSLSGNIPSQMGYTLPNLVQLHLTGNKLVGSIPNGLFNATLLTKIDLSENQFNGLMPTGFRYLTILEVLHIGGNNLTTHDDSHELEFLTSLTSSTQLKRIVVTGNPLKASLPKSIGNLSKSLELFQADHCRIYGKIPLEIGNISGLLNLNLYGNDISGPIPTTIKGLQKLQSLNLSYNELQGSIIDELCEIGSLSVLSLSSNKLSGVIPTCLGNMASLRMVYMDSNKLISEIPSSFWNLKDVLEVNLSSNALVGELPSDIARLRALVLLDLSKNEFSGNIPITISSLGTLQNLYLASNTFQGSIPPSFGEMVSLSSLDLSQNLLSGVIPKSLESLTYLKYINLSYNKLQGEIPNGGPFVNFTAQSFIHNAALCGSNPHLLVPPCAKKDRQRSRTMLLLVKCVPPIIVSIILVVIFIVVLHYKRKKVKTHLERNLSTLETMRLSYYELVRATNGFSESNLIGKGGFGSVYQGKLSSGLIVAVKVLDLDLEETSRSFEVECNAMRNLRHRNLVKIISSCSNDDFKSLVMEFMSNGSLDKWLYSHDYCLDFFQRLSIMLDVASALEYLHHGFSIPVVHCDLKPSNVLLDEGMVAHVSDFGIAKLLDKGQSKVHTKTYLATVGYVAPEYGSMGIISVKGDVYSYGIMLMEVFTRKMPTDDMFAAELSLKSWVEELLQNSIIEVVDYNLVQLYGEQIDNLLPHISSILELALSCCVNPPEERITMTDVVVSLTKIKNLFTQEN 1053
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181567g00008 1053 SUPERFAMILY L domain-like 443 690 - -
Stsc181567g00008 1053 SMART serkin_6 769 1049 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181567g00008 1053 PANTHER OS04G0122200 PROTEIN 279 1046 - -
Stsc181567g00008 1053 Pfam Protein kinase domain 770 1039 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181567g00008 1053 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 845 1053 - -
Stsc181567g00008 1053 SMART LRR_typ_2 233 257 IPR003591 -
Stsc181567g00008 1053 SMART LRR_typ_2 160 184 IPR003591 -
Stsc181567g00008 1053 SMART LRR_typ_2 506 529 IPR003591 -
Stsc181567g00008 1053 SMART LRR_typ_2 86 110 IPR003591 -
Stsc181567g00008 1053 SMART LRR_typ_2 355 377 IPR003591 -
Stsc181567g00008 1053 SMART LRR_typ_2 578 602 IPR003591 -
Stsc181567g00008 1053 SMART LRR_typ_2 530 553 IPR003591 -
Stsc181567g00008 1053 SMART LRR_typ_2 330 354 IPR003591 -
Stsc181567g00008 1053 SMART LRR_typ_2 626 649 IPR003591 -
Stsc181567g00008 1053 ProSitePatterns Serine/Threonine protein kinases active-site signature. 888 900 IPR008271 GO:0004672|GO:0006468
Stsc181567g00008 1053 FunFam Serine-threonine protein kinase plant-type 750 844 - -
Stsc181567g00008 1053 Gene3D Phosphorylase Kinase; domain 1 731 844 - -
Stsc181567g00008 1053 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 230 407 - -
Stsc181567g00008 1053 Pfam Leucine rich repeat 287 343 IPR001611 GO:0005515
Stsc181567g00008 1053 Pfam Leucine rich repeat 604 663 IPR001611 GO:0005515
Stsc181567g00008 1053 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 408 703 - -
Stsc181567g00008 1053 ProSiteProfiles Protein kinase domain profile. 769 1050 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181567g00008 1053 Pfam Leucine rich repeat N-terminal domain 14 59 IPR013210 -
Stsc181567g00008 1053 Pfam Leucine Rich Repeat 112 134 IPR001611 GO:0005515
Stsc181567g00008 1053 Gene3D Ribonuclease Inhibitor 329 708 IPR032675 -
Stsc181567g00008 1053 Gene3D Ribonuclease Inhibitor 231 328 IPR032675 -
Stsc181567g00008 1053 Gene3D Transferase(Phosphotransferase) domain 1 845 1053 - -
Stsc181567g00008 1053 Gene3D Ribonuclease Inhibitor 11 148 IPR032675 -
Stsc181567g00008 1053 SUPERFAMILY L domain-like 44 406 - -
Stsc181567g00008 1053 Gene3D Ribonuclease Inhibitor 149 230 IPR032675 -
Stsc181567g00008 1053 ProSitePatterns Protein kinases ATP-binding region signature. 775 797 IPR017441 GO:0005524
Stsc181567g00008 1053 FunFam Nuclear pore complex protein NUP107 12 150 - -
Stsc181567g00008 1053 SUPERFAMILY Protein kinase-like (PK-like) 747 1042 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181567g00008 Stsc-Chr181567 30544 34111 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181567g00008 391 687 Receptor kinase-like Gene Family AT3G47570 30.820 5.89e-29 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Stsc181567g00008 Pkinase 2.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181567g00008 - K13420 vvo:131644871 1031.94