Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181567g00007 ATGCATAATGATGCACTTTGTGGCAACCCTCGCTTACAAGTCCCTCTATGTGCTAAACAAGGTGGCAAAAGTTCAAGGGTCAAACTGGTTTTAGCCATTTGCATACCTATTGTAATAGTGTCCATCATTTTGGCTGTTGCATGCATAATTTGTCGCCGGCGTAGAATAAAAGATGTTGAGAATCCAGTTGAAAAGAATTCATCAGACTTAGGTGCAGCAAAAAGGATTCCCTATTATGAACTTTCCCAAGCAACCAATGGATTTAATGAGAGTAACTTAATTGGAAAGGGAGGTTTTGGTTCTGTGTATCAAGGCATGCTCTCTAGTGGGATGATAGTTGCAATTAAAGTGATTAATGTGGACTTGGAAGCAACATCCAAGAGCTTTGATGCAGAATGCAACGCGATGCGCAACTTACGCCATAGAAATCTTGTTAAGGTTATTACAAGTTGCTCAAATGATGATTTCAAATCCTTGGTGATGGAATTCATGCCAAATGGAAGCCTGGACAAATGGTTGTATTCACATAACTATTGTCTAGATTTCTTGCAAAGGCTGAATATAATGTTGGATGTGGCATCTGCATTGGAATATCTCCATTATGGTTCTTCAATACCAGTTGTTCATTGTGACCTCAAGCCTAGTAATGTTTTACTGGATGAAGATATGGTTGCACATGTCAGTGACTTTGGGATTGCCAAGCTTTTGGATGAAGGACAATCTATAACACATACTAAGACCTTGGCTACACTAGGCTATGTTGCACCAGAATATGGATCTAAAGGAATTGTTTCCATCAAAGGAGATGTGTACAGCTATGGGATTATGCTAATGGAAGTATTCACAAGAAAAATGCCAACAGATGATATGTTTGCTGCAGAGTTGAGCATGAAAAGTTGGATCAACAACTCAATGCCAAATTCAATCATGGAAGTTGTGGACTCTAATTTAGTACAACTATATGGTGATGAACAAATTGATGTTGTATTGCCTCATATATCATCAGTGTTGAGATTAGCTTTGAGCTGTTGTGCAGATTCAGTTGAAGAAAGAATTAAAATGACAGATGTGGTTGCAGCATTAACCAAGATCAAGAATGAGTTCACCTCAATGAAAGAAACAGAAAGCCAGTGA 1134 0.3845 MHNDALCGNPRLQVPLCAKQGGKSSRVKLVLAICIPIVIVSIILAVACIICRRRRIKDVENPVEKNSSDLGAAKRIPYYELSQATNGFNESNLIGKGGFGSVYQGMLSSGMIVAIKVINVDLEATSKSFDAECNAMRNLRHRNLVKVITSCSNDDFKSLVMEFMPNGSLDKWLYSHNYCLDFLQRLNIMLDVASALEYLHYGSSIPVVHCDLKPSNVLLDEDMVAHVSDFGIAKLLDEGQSITHTKTLATLGYVAPEYGSKGIVSIKGDVYSYGIMLMEVFTRKMPTDDMFAAELSMKSWINNSMPNSIMEVVDSNLVQLYGDEQIDVVLPHISSVLRLALSCCADSVEERIKMTDVVAALTKIKNEFTSMKETESQ 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181567g00007 377 Gene3D Phosphorylase Kinase; domain 1 70 163 - -
Stsc181567g00007 377 SMART serkin_6 88 369 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181567g00007 377 FunFam Serine-threonine protein kinase plant-type 68 163 - -
Stsc181567g00007 377 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 13 374 - -
Stsc181567g00007 377 ProSiteProfiles Protein kinase domain profile. 88 369 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181567g00007 377 ProSitePatterns Protein kinases ATP-binding region signature. 94 116 IPR017441 GO:0005524
Stsc181567g00007 377 Gene3D Transferase(Phosphotransferase) domain 1 164 377 - -
Stsc181567g00007 377 Pfam Protein kinase domain 89 358 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181567g00007 377 ProSitePatterns Serine/Threonine protein kinases active-site signature. 207 219 IPR008271 GO:0004672|GO:0006468
Stsc181567g00007 377 SUPERFAMILY Protein kinase-like (PK-like) 71 361 IPR011009 -
Stsc181567g00007 377 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 164 374 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181567g00007 Stsc-Chr181567 28399 29879 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181567g00007 3 374 Receptor kinase-like Gene Family AT3G47570 39.356 2.57e-86 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Stsc181567g00007 Pkinase 6.5e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181567g00007 - K13420 vvo:131644871 515.768