Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181566g00001 ATGGATGCGGCTGACGAAGAACAGCAGCAGGTTTCGTCGACGTCGAAGAGCTGGGCGAAGCAGATTGAGGAGAGTTATCAGCTTCAGCTCCAGCTGGCACTTCGCGTCTCTTCGCATTCTGCTTCCGCCAACACTCCCAATTTTCTTGACTTGCAACCCACCTCTTCTTCCGATTCTGCTCAGGCAATGTCGCACCGTTTTTGGGTAAATGGTTGTTTGCAATACTCGGACAAAATTCTCGATGGCTTCTACCTAATCCATGGGGTGGATGCTTACACATGGTCGATAAGTTCTGATCTGCAGAATGTTGGTATAATTCCTTCATTTGAATCACTGATGTCAGTAGAACCTTTCGACGACTCGTCAATTGTAGTGGTTGCTATTGATAAATCTAGAGATCCTGGTCTGAGAGAACTGCAGAGTAAAGTAGTCAGTCTTTCAAGTAGCTGGGTTTCTCCCAAATTTGCAGCTGATCAGGTTGCAAATCTTGTTTATAGTAGGATGGGTGGAACATGTTCAACTGAGGAACATTTAGGCTCACAGTGGAAGGAATGCGCCCAAAAACTAAAAAGCCACCTGAATTCTGTCATTCTTCCGATTGGAAGCTTAGCTGTTGGTCTTTGTGTTCATCGAGCATTGCTGTTTAAAGTGTTAGCTGACTTAATTAACTTACCTTGCCGAATTGCTAAGGGCTGCAAGTATTGTAGCAGTGATATGGGTGCTTCGTGCATAGTGCAATTTGATTCTGACAGGGAGTATATGATTGATTTAGTTGGAAGGCCTGGGTCAATGTGTCAGCCTGATTCTTTGCTGAACTCTGCATCGTCAATGATGGTCTCTTCACCATTATGTCATCCAAAGTTCAAGACAGTTGAAGCAGCTGAATTCACCAAGACGTTGGCCCAATCATTTTTTTTGGACAGTCAAGGACTGCATCTTATATTTGACACAACATCAGGTGGTAAAGTTAATGTTAGTGACAGAGTGGATGTACAACCACCTAAAACTTCTAGTGCACACTCTGGCTATGCGGATGGGAATGCCCACCTGGTTGCATCGGATCTTAGTACTGAGGATTATGTTTCTGTTAACGAAACAAACCAGTCTGTAGTGGATTGTCCAAGCCAGGAAGTTGATCTAGGTGTGGAGGACCTAAACATTCCATGGAGTGAGCTTGTTCTAAAGGAGAACATTGGGGCAGGGTCATTTGGAACTGTCATTCGTGCAGATTGGCATGGTTCTGATGTTGCTGTGAAGATTCTTAAGGTGCAAGGTTTTGATTCTGAGCGAATAGAAGAGTTTCTGAAGGAGGTCTCCTTGATGAAGCGCCTGCGGCACCCAAACATTGTACTTCTGATGGGTGCAGTATTTCAACCCCCAAGGTTATCTATAGTAACAGAATATTTATCAAGAGGCAGCTTGTATGAACTTCTGCGCATGCCCGGTGTTGGAACATCACTCAGTGAGATGCGTCGACTAAACATGGCTTACGATGTGGCAAGGGGAATGAATTATCTCCATCAAATGCGACCTCCCATTGTTCATGGAGATTTGAAGTCCCCAAATCTTTTGGTTGACAATACATACACTGTCAAGGTAGGTGACTTTGGCCTTTCACGTACAAAAGCAAATACATTCCTTTCATCTAAAACTGCAGCTGGGACACCCGAATGGATGGCGCCAGAAGTCATCCTAGGCAAACCATCAAATGAAAAATGCGATGTGTTCAGCTTTGCTGTAATATTGTGGGAGCTAGTTACCCTCGAACAACCATGGAGACAGTTAAATCCTTCACAGGTTGTTGCGGCTGTTGGTTTTATGGATCAAAGGCTAGAGATTCCAAGCCATGTAAATCCTCAAGTGGCTGCATTGATTGAGCTCTGTTGGGATAGTGATCCCACGAGACGCCCGTCTTTCTCCCAAGTTATGAAACGTTTGCGGGAAATAACTGACACTGCTAATGGGTGA 1968 0.4456 MDAADEEQQQVSSTSKSWAKQIEESYQLQLQLALRVSSHSASANTPNFLDLQPTSSSDSAQAMSHRFWVNGCLQYSDKILDGFYLIHGVDAYTWSISSDLQNVGIIPSFESLMSVEPFDDSSIVVVAIDKSRDPGLRELQSKVVSLSSSWVSPKFAADQVANLVYSRMGGTCSTEEHLGSQWKECAQKLKSHLNSVILPIGSLAVGLCVHRALLFKVLADLINLPCRIAKGCKYCSSDMGASCIVQFDSDREYMIDLVGRPGSMCQPDSLLNSASSMMVSSPLCHPKFKTVEAAEFTKTLAQSFFLDSQGLHLIFDTTSGGKVNVSDRVDVQPPKTSSAHSGYADGNAHLVASDLSTEDYVSVNETNQSVVDCPSQEVDLGVEDLNIPWSELVLKENIGAGSFGTVIRADWHGSDVAVKILKVQGFDSERIEEFLKEVSLMKRLRHPNIVLLMGAVFQPPRLSIVTEYLSRGSLYELLRMPGVGTSLSEMRRLNMAYDVARGMNYLHQMRPPIVHGDLKSPNLLVDNTYTVKVGDFGLSRTKANTFLSSKTAAGTPEWMAPEVILGKPSNEKCDVFSFAVILWELVTLEQPWRQLNPSQVVAAVGFMDQRLEIPSHVNPQVAALIELCWDSDPTRRPSFSQVMKRLREITDTANG 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181566g00001 655 PRINTS Tyrosine kinase catalytic domain signature 573 595 IPR001245 GO:0004672|GO:0006468
Stsc181566g00001 655 PRINTS Tyrosine kinase catalytic domain signature 554 564 IPR001245 GO:0004672|GO:0006468
Stsc181566g00001 655 PRINTS Tyrosine kinase catalytic domain signature 617 639 IPR001245 GO:0004672|GO:0006468
Stsc181566g00001 655 PRINTS Tyrosine kinase catalytic domain signature 507 525 IPR001245 GO:0004672|GO:0006468
Stsc181566g00001 655 PRINTS Tyrosine kinase catalytic domain signature 466 479 IPR001245 GO:0004672|GO:0006468
Stsc181566g00001 655 CDD STKc_MAP3K-like 398 646 - -
Stsc181566g00001 655 Gene3D Phosphorylase Kinase; domain 1 385 470 - -
Stsc181566g00001 655 FunFam Serine/threonine-protein kinase isoform 1 383 470 - -
Stsc181566g00001 655 SUPERFAMILY Protein kinase-like (PK-like) 378 646 IPR011009 -
Stsc181566g00001 655 ProSitePatterns Serine/Threonine protein kinases active-site signature. 513 525 IPR008271 GO:0004672|GO:0006468
Stsc181566g00001 655 SMART serkin_6 392 650 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181566g00001 655 Gene3D Transferase(Phosphotransferase) domain 1 471 654 - -
Stsc181566g00001 655 ProSitePatterns Protein kinases ATP-binding region signature. 398 419 IPR017441 GO:0005524
Stsc181566g00001 655 Pfam Ethylene-responsive protein kinase Le-CTR1 60 264 - -
Stsc181566g00001 655 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 43 649 - -
Stsc181566g00001 655 Pfam Protein tyrosine and serine/threonine kinase 393 646 IPR001245 GO:0004672|GO:0006468
Stsc181566g00001 655 ProSiteProfiles Protein kinase domain profile. 392 650 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181566g00001 655 FunFam PAS domain-containing protein tyrosine kinase family protein 470 654 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181566g00001 Stsc-Chr181566 36232 46050 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181566g00001 18 653 MAP Kinase Kinase Kinase AT5G03730 55.896 0.0 683
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Stsc181566g00001 PK_Tyr_Ser-Thr 1.5e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181566g00001 K14510 - gmx:100807496 979.163