Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181563g00007 ATGGATACTGATGAAAATGTGATCTCAGAGACAGAAATTGACACTCAACTAATACAAAAGAATGACATAATTAAGATTGTTCCTGGGGCGAAAATTCCTATTGATGGTGTTGTTATAAAAGGGCAAAGCTATGTAAATGAAAGTATGATTACTGGGGAGGCAAAACCTGTTGATAAAAATCCTGGTGACAAGGTTATCGGTGGAACAATCAATGAGAATGGCTGCTTACTGATTAGGGCTACACATGTTGGATCAGATACTGCACTTTCTCAAATTGTTCAGCTTGTAGAAACCGCTCAACTAGCTAAAGCACCAGTTCAAAAACTCGCTGACCACATTTCAAGGGTTTTTGTTCCATTAGTGGTGGTTGCAGCATTCTTAACTTGGATGGGATGGTTTGTTCCTGGGGAAGTTGGTTTATACCCTAAGAATTGGATACCAAAAGCAATGAACGCATTTGAACTTGCTCTGCAATTTGCTATTTCTGTACTAGTTGTTGCTTGCCCGTGTGCTTTGGGACTGGCGACACCAACTGCAGTCATGGTTGCTTCAGGCATGGGTGCTTCTCAAGGTGTTCTCATCAAGGGTGGAGATGCATTGGAAAAGGCACACAAGGTAAAAGTTGTTGTGTTTGACAAGACTGGGACACTTACAGTTGGAAAGCCGGTCGTTGTTAGTGCAGTTCTGTTTTCTGACTTTACTATGGAAGAGTTTTATGACATGACAATAGCAGTGGAGTCAAGTAGTGAGCACCCACTAGCAAAAGCTGTTGTTAACCATGCAAAGAAGCTGCGCAAGAAATTTGGTTCCAACAATGAGGAAGTGCCAGATGTGAAGGACTTTGAGGTGCTAGTGGGAGCTGGTGTGAGTGGAAAAGTTGGTGAAAGAACAATTCTTGTTGGAAACAAGAGACTTATGCATGCTTGTAATGTTCCATTGAGTTCCGAGGTTGAGAGGTACATGTCTGAGAATGAAATTCTAGCCAGAACTTGTGTTCTGGTTTCAATTGACGGGAAGATTGCTGGAGCATACTCTGTAACTGATCCATTAAAGCCCGAAGCTAAGCGTGTCATATCTTTTCTCCACTCCATGGGCATTTCAAGCATCATAGCGACCGGTGATAACCTTGCTACTGNNNNNNNNNNCATTGATGAGGTCTTCGCTGAGACGGATCCACTAGGGAAAGCTGATAAGGTGAAAGAGTTACAGATGAAAGGGATGACAGTGGCAATGGTGGGCGATGGAATTAATGACTCGCCGGCCTTGGTTGCCGCTGATGTTGGTATGGCAATAGGTGCTGGAACTGATGTAGCCATAGAAGCAGCTGATATAGTGCTTGTGAAAAACAGCTTGGAAGATGTGATCACAGCCATAGATCTGTCGAGAAAGACCATGTCACGCATCCGGCTCAACTATATCTGGGCTCTCGGCTATAACATTCTAGGCATGCCTGTTGCTGCCGGTGTCTTGTACCCCTTTACTGGAATAAGATTGCCTCCATGGCTTGCCGGTGCTTGCATGGCTGCTTCTTCTATTAGCGTGGTTTCTTCATCTCTTCTGCTGCAATTGTATAAAAAACCCATTTGA 1587 0.4354 MDTDENVISETEIDTQLIQKNDIIKIVPGAKIPIDGVVIKGQSYVNESMITGEAKPVDKNPGDKVIGGTINENGCLLIRATHVGSDTALSQIVQLVETAQLAKAPVQKLADHISRVFVPLVVVAAFLTWMGWFVPGEVGLYPKNWIPKAMNAFELALQFAISVLVVACPCALGLATPTAVMVASGMGASQGVLIKGGDALEKAHKVKVVVFDKTGTLTVGKPVVVSAVLFSDFTMEEFYDMTIAVESSSEHPLAKAVVNHAKKLRKKFGSNNEEVPDVKDFEVLVGAGVSGKVGERTILVGNKRLMHACNVPLSSEVERYMSENEILARTCVLVSIDGKIAGAYSVTDPLKPEAKRVISFLHSMGISSIIATGDNLATXXXXIDEVFAETDPLGKADKVKELQMKGMTVAMVGDGINDSPALVAADVGMAIGAGTDVAIEAADIVLVKNSLEDVITAIDLSRKTMSRIRLNYIWALGYNILGMPVAAGVLYPFTGIRLPPWLAGACMAASSISVVSSSLLLQLYKKPI 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181563g00007 528 PRINTS H+-transporting ATPase (proton pump) signature 412 428 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc181563g00007 528 PRINTS H+-transporting ATPase (proton pump) signature 443 468 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc181563g00007 528 PANTHER P-TYPE CATION-TRANSPORTING ATPASE 2 527 - -
Stsc181563g00007 528 PRINTS P-type cation-transporting ATPase superfamily signature 46 60 - -
Stsc181563g00007 528 PRINTS P-type cation-transporting ATPase superfamily signature 364 374 - -
Stsc181563g00007 528 PRINTS P-type cation-transporting ATPase superfamily signature 342 353 - -
Stsc181563g00007 528 PRINTS P-type cation-transporting ATPase superfamily signature 435 447 - -
Stsc181563g00007 528 PRINTS P-type cation-transporting ATPase superfamily signature 412 431 - -
Stsc181563g00007 528 PRINTS P-type cation-transporting ATPase superfamily signature 210 224 - -
Stsc181563g00007 528 ProSitePatterns E1-E2 ATPases phosphorylation site. 212 218 IPR018303 -
Stsc181563g00007 528 SUPERFAMILY Calcium ATPase, transduction domain A 10 96 IPR008250 -
Stsc181563g00007 528 SFLD Haloacid Dehalogenase 192 464 - -
Stsc181563g00007 528 NCBIfam HAD-IC family P-type ATPase 10 489 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc181563g00007 528 Pfam haloacid dehalogenase-like hydrolase 206 426 - -
Stsc181563g00007 528 SUPERFAMILY HAD-like 208 518 IPR036412 -
Stsc181563g00007 528 CDD P-type_ATPase_Cu-like 9 508 - -
Stsc181563g00007 528 Gene3D - 1 100 - -
Stsc181563g00007 528 FunFam Copper-transporting ATPase 1, putative 1 100 - -
Stsc181563g00007 528 Gene3D - 201 462 IPR023214 -
Stsc181563g00007 528 Pfam E1-E2 ATPase 10 188 - -
Stsc181563g00007 528 NCBIfam heavy metal translocating P-type ATPase 9 521 IPR027256 GO:0006812|GO:0016020|GO:0019829
Stsc181563g00007 528 SFLD p-type atpase 192 464 IPR044492 -
Stsc181563g00007 528 SUPERFAMILY Calcium ATPase, transmembrane domain M 99 469 IPR023298 -
Stsc181563g00007 528 Gene3D - 221 350 IPR023299 GO:0000166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181563g00007 Stsc-Chr181563 35356 38503 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181563g00007 1 527 Primary Pumps ATPases AT1G63440 63.158 0.0 675
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181563g00007 K17686 - gmx:100793894 891.338