Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181563g00006 ATGGAAGCAAACGGCGATCTTAAGATACCTCTGTTGCAGGCTTCACCTGAAGATGCCACAGTTGGGACGGTTATGTTTCAAATAGGTGGCATCAAGTGTGCATCTTGTGTAAATTCTGTTGAATCTGCAATTAAGGACCTCCATGGAGTAAACAGCATCATGGTTTCGCCGCTTGACGGCCGAGCTGTAATAAAATATTCTCCCAAGTTTATCACTGCGAAAAAAATAAAAGAAGCAATAGAAGACAGTGGCTTTGGAGTTGAAGAGCTTCAGGAGCAAGAGATATCGATGATTGATGGAGTGAAAAAGGCAACTGTAGGTCTGGCTTTAGAGGAGGCCAAAGTGTACTTTGATCCTAACATCGCTGATGCTAACAAGATAGTTGAGGCTATAGAGGATGCTGGTTTCAGAGCAGAACTTATTAGCTCTGCTAATGATGCGAACAAAGTGCATTTAAAAGTTGAAGGGGTTGATTCTGCCGAAGATGTAAATATTGTATTGTCTTCGCTTGAGTTAGCGGCAGGTGTGAATCATGTTGAGTTCAATTTGAAAGAGCATATAGCTACAGTTAGCTATGAACCGGATATTACGGGTCCAAGATCTCTCATTCAATGCATTCAGACAGCTAGCTCTGGCACCAAGATGTACCAGGCATCCTTGCACACTAATTCAGGAAAAAGAGAAAGGGATAAGGTGGATGAAATTCGTAATTACAGGGACCAATTTTTGTTCAGCTGCTTATTTTCGGTTCCTGTGTTTGTATTTGCCATGGTGCTTCCCATGCTTCCTCCCTATGGGAACTGGTTGAACTATAAAATACACCATATGCTGACTCTTGGGCTGTTTCTGAGATGGATACTTAGTACGCCTGTGCAGTTCATAGTTGGCAAAAGGTATTACTAA 903 0.4208 MEANGDLKIPLLQASPEDATVGTVMFQIGGIKCASCVNSVESAIKDLHGVNSIMVSPLDGRAVIKYSPKFITAKKIKEAIEDSGFGVEELQEQEISMIDGVKKATVGLALEEAKVYFDPNIADANKIVEAIEDAGFRAELISSANDANKVHLKVEGVDSAEDVNIVLSSLELAAGVNHVEFNLKEHIATVSYEPDITGPRSLIQCIQTASSGTKMYQASLHTNSGKRERDKVDEIRNYRDQFLFSCLFSVPVFVFAMVLPMLPPYGNWLNYKIHHMLTLGLFLRWILSTPVQFIVGKRYY 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181563g00006 300 Gene3D - 145 221 - -
Stsc181563g00006 300 PRINTS Copper-transporting ATPase 1 signature 49 72 - -
Stsc181563g00006 300 PRINTS Copper-transporting ATPase 1 signature 23 48 - -
Stsc181563g00006 300 PRINTS Copper-transporting ATPase 1 signature 78 98 - -
Stsc181563g00006 300 Pfam Heavy-metal-associated domain 26 85 IPR006121 GO:0046872
Stsc181563g00006 300 CDD HMA 25 88 IPR006121 GO:0046872
Stsc181563g00006 300 PANTHER P-TYPE CATION-TRANSPORTING ATPASE 19 94 - -
Stsc181563g00006 300 Gene3D - 18 89 - -
Stsc181563g00006 300 SUPERFAMILY HMA, heavy metal-associated domain 144 212 IPR036163 GO:0046872
Stsc181563g00006 300 SUPERFAMILY HMA, heavy metal-associated domain 21 92 IPR036163 GO:0046872
Stsc181563g00006 300 CDD HMA 152 197 IPR006121 GO:0046872
Stsc181563g00006 300 SUPERFAMILY HMA, heavy metal-associated domain 93 146 IPR036163 GO:0046872
Stsc181563g00006 300 FunFam ATPase copper transporting beta 19 92 - -
Stsc181563g00006 300 ProSiteProfiles Heavy-metal-associated domain profile. 148 214 IPR006121 GO:0046872
Stsc181563g00006 300 Gene3D - 91 144 - -
Stsc181563g00006 300 NCBIfam copper ion binding protein 25 87 IPR006122 GO:0005507
Stsc181563g00006 300 ProSiteProfiles Heavy-metal-associated domain profile. 22 88 IPR006121 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181563g00006 Stsc-Chr181563 33624 35017 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181563g00006 18 300 Primary Pumps ATPases AT1G63440 34.936 2.40e-60 205
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181563g00006 K17686 - gmx:100793894 440.654