Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181563g00003 ATGGACGAAGATTTCGACTTGCCTGCGGCGGAGCCTATGACCGACGACTTCGACTTCGCCGGCGGCGGCGGCGGAATGGACGATGATTTCCCCGTTCTCAAGGTCGGAGAGGAGACTGAAATTGGGAAGCTTGGATTGAAGAAGAAGCTCCTCAAAGAAGGTGAAGGATGGGAAACTCCTGAAGCCGGTGATGAAGTCCAAGTTCACTATACTGGGACTCTGCTTGATGGCACCAAGTTTGATTCCAGCAGAGATAGGGGAACGCCTTTCAAGTTCACACTTGGACAAGGGCAAGTAATTAAAGGATGGGATGAAGGTATTAAAAGCATGAAGAAAGGTGAAAATGCCCTTTTCACCATCCCACCTGAGCTAGCTTATGGCGAATCCGGTTCTCCTCCAACAATTCCTCCCAAAGCAACTCTTCAATTTGATGTTGAGCTGCTGTCTTGGTCTAGTGTGAAGGACATCTGTAAGGATGGAGGTTTGTTTAAGAAGATAATTGTTGCGGGAGAGAAATGGGAGAACCCGAAGGATCCGGATGAAGTTCTAGTTAATTATGAGGCATGCCTTGAAGATGGAACACTTGTAACGAAATCTGATGGAGTAGAGTTCACAGTAGAAGACGGTCACTTTTGCCCTGCATTGTCAAAGGCCATCAAAACCATGAAGAAGGGAGAAAAAGTGATTTTGACCGTGAAGCCACAATATGGATTTGGCGAGAAGGGAAAGCCAGCCCATGGTAATGAAGGCGCAGTTCCACCAAACGCAACATTGCTGATTACTCTCGAGTTAGTCTCTTGGAAGACAGTGACAAATGTAACCGATGACAAGAAGGTCATGAAAAAGATCCTTAATGAAGGGGAAGGATATGGTCGTCCAAATGAGGGAGCCATTGTGAAATTGAAACTTACTGGTAAGCTGCACGATGGCACTATTTTTATGAAGAAAGGCCATGATGGTGAAGGGGATCTACTTGAATTCAAAACAGATGAGGAGCAAGTAATTGAGGGGCTTGATAAGGCTGTGTTGACGATGAAGAAGGGTGAGGTAGCACTGTTGACTATTGCTCCTGAGTATGCCTTTGGTTCATCAGAATCAAAGCAGGAATTGGCAATTGTTCCACCTAACTCCACTGTGTATTATGAGGTTGAATTAGTATCTTTTGAGAAGGATAAGGAATCTTGGGAGATGGATACTCCAGAGAAAATTGAAGCTGCTGGTAAGAAGAAAGAAGAAGGGAACGCACTGTTTAAAGCTGGTAAATATGCAAAAGCTTCTAAAAGATATGAAAAGGCTTTGAAGTTCATAGAATATGATACCAACTTCAGCGTTGAAGAGAAGAAGAGTGCCAAGGACTTGAAGGTTGCTTGCAATTTGAATGATGCAGCTTGCAAGTTGAAGTTGAAAGATTATAAACAAGCAGAGAAATTGTGTACAAAGGTTTGGCCCTCAAGAGCACAAGCACATATCCAGTTGGCTGACTTGGATTTGGCAGAGTTTGATATCAAGAAAGCACTTGAGCTTGACCCTAATAACAGGGATGTTAAGCTAGAGTACAGGACTTTGAAGGAAAAGATGAAGGAGTACAACAAAAGAGAGGCAAAATTTTATGGAAATATGTTCAGCAAAATGACCAAGTCAGACAAACCTGCCTCCCCAGATTCAAAACCCATGAGTATTGACAGCAAGGCATAA 1695 0.436 MDEDFDLPAAEPMTDDFDFAGGGGGMDDDFPVLKVGEETEIGKLGLKKKLLKEGEGWETPEAGDEVQVHYTGTLLDGTKFDSSRDRGTPFKFTLGQGQVIKGWDEGIKSMKKGENALFTIPPELAYGESGSPPTIPPKATLQFDVELLSWSSVKDICKDGGLFKKIIVAGEKWENPKDPDEVLVNYEACLEDGTLVTKSDGVEFTVEDGHFCPALSKAIKTMKKGEKVILTVKPQYGFGEKGKPAHGNEGAVPPNATLLITLELVSWKTVTNVTDDKKVMKKILNEGEGYGRPNEGAIVKLKLTGKLHDGTIFMKKGHDGEGDLLEFKTDEEQVIEGLDKAVLTMKKGEVALLTIAPEYAFGSSESKQELAIVPPNSTVYYEVELVSFEKDKESWEMDTPEKIEAAGKKKEEGNALFKAGKYAKASKRYEKALKFIEYDTNFSVEEKKSAKDLKVACNLNDAACKLKLKDYKQAEKLCTKVWPSRAQAHIQLADLDLAEFDIKKALELDPNNRDVKLEYRTLKEKMKEYNKREAKFYGNMFSKMTKSDKPASPDSKPMSIDSKA 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181563g00003 564 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 296 389 IPR001179 GO:0003755
Stsc181563g00003 564 SUPERFAMILY TPR-like 395 544 IPR011990 GO:0005515
Stsc181563g00003 564 SUPERFAMILY FKBP-like 45 155 - -
Stsc181563g00003 564 Gene3D Tetratricopeptide repeat domain 392 539 IPR011990 GO:0005515
Stsc181563g00003 564 FunFam Peptidylprolyl isomerase 394 539 - -
Stsc181563g00003 564 FunFam Peptidylprolyl isomerase 36 154 - -
Stsc181563g00003 564 Gene3D - 39 153 IPR046357 GO:0003755
Stsc181563g00003 564 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 63 151 IPR001179 GO:0003755
Stsc181563g00003 564 SUPERFAMILY FKBP-like 155 270 - -
Stsc181563g00003 564 FunFam Peptidylprolyl isomerase 155 268 - -
Stsc181563g00003 564 FunFam Peptidylprolyl isomerase 269 391 - -
Stsc181563g00003 564 MobiDBLite consensus disorder prediction 543 564 - -
Stsc181563g00003 564 Gene3D - 154 268 IPR046357 GO:0003755
Stsc181563g00003 564 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 179 268 IPR001179 GO:0003755
Stsc181563g00003 564 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 159 271 - -
Stsc181563g00003 564 SUPERFAMILY FKBP-like 274 406 - -
Stsc181563g00003 564 ProSiteProfiles TPR repeat profile. 479 512 IPR019734 GO:0005515
Stsc181563g00003 564 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 58 148 IPR001179 GO:0003755
Stsc181563g00003 564 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 292 386 IPR001179 GO:0003755
Stsc181563g00003 564 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 174 265 IPR001179 GO:0003755
Stsc181563g00003 564 Coils Coil 512 532 - -
Stsc181563g00003 564 SMART tpr_5 406 439 IPR019734 GO:0005515
Stsc181563g00003 564 SMART tpr_5 479 512 IPR019734 GO:0005515
Stsc181563g00003 564 Gene3D - 269 391 IPR046357 GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181563g00003 Stsc-Chr181563 22130 26256 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181563g00003 33 544 Calmodulin-binding Proteins AT3G25230 78.161 0.0 823
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181563g00003 K09571 - gmx:100803189 920.998