Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181560g00005 ATGGAAGCCAAGCCTCTTGAATCTGTTCCCTCTTCACACAACACCACTCCTGGTTTCTTTTTCTCTTCCTCTCCATTTTTGTTTTCTGTGCTTTTTTTCAAAATTTTTTTCTTTTACTTCTCACTTTTTTTTTGTGGTACTTTTGTTTTTGTTTATTTTTTTTTTCACTTTCTAGGTGGACCCCAGAAGAAGATTGACATGGGACAAAAGATGGAAGGTGGTGATGGTGTTGGAGTGATCAAGGAAAAGAAGAAAAACACAACAAGTTTTGAAATTGGTGCTGGGTTTGGAGGTGCTTCTGCTACAAACACTGAAACACTGAAGACAAAGAAAAAAGAAAAAGAAGAAGAAGAAGAAGGAACTAAAAGAAAACCAGCTTTGAAGAACAAAGCATGCCAACAACAACAAGATAGATGTGGTTTCTTGTTCACAGAAGCTCAAAGGCGTGAGCTTCACCATCAAGTTCTCATCTTTAACCACTTTGCTTCTTATCTCCCTCTCCTTCTCCCTCTACCCTATCATCATCACCTTGTTCCACCCTTTGGTTCTGGATTTGGTGTTTTTCATCATCAATTTCCAATCTATATGGCAGAATACAATAATTACCAATGTTTTGACTATCGAAGCATGATGGATCCCGAACCGAATAGGTGTAGAAGAACTGATGGAAAGAAATGGAGGTGCAGCAAGAACACATTACCTGGTCATAAGTATTGTGAACGACACGTGCACAGAGGTCGGAACCGTTCAAGAAAGCCTGTGGAAGCATCTGATGTTAACTCAGATTCTATAACAAAGCCTTGTAACAAGCTACCTACCACCATAGTCTCAAACACAGAATCTGCTGTTTCAATTCCAACCCCTGGCCCTAAGGTAATAAACTTTGGCAACATGATATCAGTTGTTTCGGATAACAGAAGTAGCCATAATTTAAGCAAGAAGGATAATGAGATCAAGAGCTGTGTCGGCTACAGTATCAGTGTAATTAGCAGTGGCAAAGGAAGTGTTACCTATGATGGTACTAACTGCATCTCTGCTGGTGCTGGTGCTAGCATAGGCTTCTCCCCAAGGAGTGTTCTCCAAGTTTCTGGTTGCAATAGTTCGCACTGCAACTATGGAAACAGTATAGACCTTGAACCAGGCAGGTGCCGGAGAACAGACGGCAAGAAGTGGCGGTGCAAAAGCGCCGTTCTTCCTGGTCATAAGTACTGCACCACTCACGTGCACAGAGGATCTAAAAGGCATTCCGCGGATCGTGAGCCAGCCACTACTACTACTCCTCCTCAATGTGCCAATACCAATTCTCCTCCGGTTTACTCTGTCGCGGAGATGACAATAACAACCGAAGAACAGCAAGCAGTTTGCAAAATTCCTAACACAACCCTTTCAATGTCAATCCCTGCAAGTGCACCATTGACACAGAACAATGGGAAGAGTCCTAATAGCAGCAGTGACACAGACACCACCATCAGTGACACTATCAATGAGTGTAGCTATGCTTCTTTCTAA 1509 0.4235 MEAKPLESVPSSHNTTPGFFFSSSPFLFSVLFFKIFFFYFSLFFCGTFVFVYFFFHFLGGPQKKIDMGQKMEGGDGVGVIKEKKKNTTSFEIGAGFGGASATNTETLKTKKKEKEEEEEGTKRKPALKNKACQQQQDRCGFLFTEAQRRELHHQVLIFNHFASYLPLLLPLPYHHHLVPPFGSGFGVFHHQFPIYMAEYNNYQCFDYRSMMDPEPNRCRRTDGKKWRCSKNTLPGHKYCERHVHRGRNRSRKPVEASDVNSDSITKPCNKLPTTIVSNTESAVSIPTPGPKVINFGNMISVVSDNRSSHNLSKKDNEIKSCVGYSISVISSGKGSVTYDGTNCISAGAGASIGFSPRSVLQVSGCNSSHCNYGNSIDLEPGRCRRTDGKKWRCKSAVLPGHKYCTTHVHRGSKRHSADREPATTTTPPQCANTNSPPVYSVAEMTITTEEQQAVCKIPNTTLSMSIPASAPLTQNNGKSPNSSSDTDTTISDTINECSYASF 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181560g00005 502 MobiDBLite consensus disorder prediction 409 435 - -
Stsc181560g00005 502 ProSiteProfiles WRC domain profile. 377 421 IPR014977 -
Stsc181560g00005 502 MobiDBLite consensus disorder prediction 421 435 - -
Stsc181560g00005 502 MobiDBLite consensus disorder prediction 244 263 - -
Stsc181560g00005 502 ProSiteProfiles WRC domain profile. 212 256 IPR014977 -
Stsc181560g00005 502 MobiDBLite consensus disorder prediction 106 126 - -
Stsc181560g00005 502 MobiDBLite consensus disorder prediction 466 491 - -
Stsc181560g00005 502 MobiDBLite consensus disorder prediction 104 129 - -
Stsc181560g00005 502 PANTHER GROWTH-REGULATING FACTOR 5 368 482 IPR031137 GO:0005634|GO:0006351|GO:0032502
Stsc181560g00005 502 Pfam WRC 213 255 IPR014977 -
Stsc181560g00005 502 Pfam WRC 379 416 IPR014977 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181560g00005 Stsc-Chr181560 23673 26680 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181560g00005 146 425 GRF Transcription Factor Family AT2G45480 33.333 5.21e-32 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181560g00005 - - ahf:112753949 602.438