LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc181560g00002	ATGGCGGCTTCTTCTTCTTCTCCTCGTTTTAAATATGACGTCTTCATTAGTTTCGGAGGTTTAGATACTCGCGTCGGTTTTCTCAGCCATTTGGTCGAGGCATTACGTCAGAAAGGTATTGATGCATACGTGGATGACAGGCTTGAAAAAGGAGATGAGATAATGGCAGCACTTTTTACAGCAATTGAAGAATCACGAATTGCATTAATCATATTCTCAGAGGGCTATGCCTCTTCGAAATGGTGTTTGAAAGAGCTTGTCAAAATAACGGAATACCAAAAGGAAAAGGGACAAATCGTCATACCTATTTTTTACAATGTTGAACCTTCACAGGTGCGACATCTAAAGAGGTCCTATGCAGAAGCATTCAGTAAACATGAAAATAACTCAGAAGACGATGTAGATAAATGGAGAACTGCATTGAATGGAGTTGCCAATTTATCTGGATTTGTTTCCAAAGGAAGTGAGGCTTTGCTCGTTAAAGAAGTTGTGAAACGCATCTTGAAAACTTTAGATGGTTTGCAACCAACTGATGATTTTCTTCAAGGCCTCGTTGGAATTCGTAAACCACTTCAAGATCTTAAGTCACTAGTTCATGCCAATGGATCAAACGATGTTCGTGTTATAGGGATTTGGGGCATGGGCGGGATAGGTAAGTCAACTATTGCTAAGGCATTATTTCTCTCACTCCGTTCAGAATATGCAACTGGTTATTTTCTATATAATGTCAGACAACAAACAGAAAAGGGTCGAATGCCTCAAATGAAAAATAAACTTCTCCGCATATTACTTGAGGATAAAGATCTCGACGCTGGTGTTCCGAATGTAGCATTAGCTCGTGTTTCGAGGAGACTCTGTCACAAAAAGGTCGTTGTTGTTCTTGATGACGTCGATAATGCAGAACAAGTTAGGAAATTAGTTGGAGGCCATGGTCAACGTGGTTGGTTGGGTCCTGGAAGTAGAATCATTGTCACAACCAGAGATATGCATGTCCTTCGTAAAGAAGCTGATGATTATTATGAAGTGAAATCTTTAGGATATGATGAAGCTCTACGACTGTTAACTTTGCATGCCTTTCATGGAAATGACATCCCAGATGGTTACAATGATGTTGTGAAGGAAATTGTTGATTATGCTAAAGGCGTTCCATTAGCTTTAGAAGTTTTGGGTTCTTCTCTTTATGGCCTAAGTGTTGAAGAATGGACAAGTCAGTTGGAAAAGCTTCGAAAGATGCCAGATATAGGAATTCAAAAAGTTTTGAGATTCAGCTATGATGGATTAGATGAGCATGATCAAAAGTTACTTCTGTATATAGTCTGTTTCTTTACATGTCAAGTTGTATTAACACATGGTTTTGAAGATGTAAAGATGTTACTTGAACCATGTGGCTTCGCAACTGCTATTGGTTTGAGAATCCTCCAAGATAGAAGTCTCATAAGTACAAAATGCAGCTGGGTAGCATTTGCAGTACATGACTTGATCCGACAAATGTGCCAAGAGATTGTTGTTCGTGAAAAAGAAAAACCGGGGAAACGACGTCATCTGTGGGATCCTAATGACATTTATCATGTTTTGAATAATGACAAGGGAACTGAGTCTATTGAAACTATAAGCTTGGATATATCAGAGATAAATAATCTGAGCTTGACTCCTAATACCTTTGCTAGTATGCTCAATCTCAATCTTCTGAGGATTTCCGCACCCGATGAAGATGATGATGAGAATTATGATGAGGACATCCCTCAGCCGTGCTTAAAATTTGATAATCGAGTGCATGCCCGTGAAGATCATACGATTCATCTCCCATATAATTTAAGGCTTTTGGATTGGAAGTTTTGCCCTTTTAAGTCCTTGCAACCAACAGGACTGGAGAATCTTGTTCAACTTCGTATGGGATGTAGTAGCCTTCAAAAACTTTGGGACGGTACACAGAACCTACCAAATCTGAGGAAAGTACACTCATCAGTTTTCTCCCTTCCAAAGCTTGTTAAATTGAACATGAACTTTTGTAAAAGGCTCGAGAGTCTTTCAGGGACGGATTTAGAGGGGCAGTATAAGTCCTGGCCCCCAGGATTCTAA	2079	0.3954	MAASSSSPRFKYDVFISFGGLDTRVGFLSHLVEALRQKGIDAYVDDRLEKGDEIMAALFTAIEESRIALIIFSEGYASSKWCLKELVKITEYQKEKGQIVIPIFYNVEPSQVRHLKRSYAEAFSKHENNSEDDVDKWRTALNGVANLSGFVSKGSEALLVKEVVKRILKTLDGLQPTDDFLQGLVGIRKPLQDLKSLVHANGSNDVRVIGIWGMGGIGKSTIAKALFLSLRSEYATGYFLYNVRQQTEKGRMPQMKNKLLRILLEDKDLDAGVPNVALARVSRRLCHKKVVVVLDDVDNAEQVRKLVGGHGQRGWLGPGSRIIVTTRDMHVLRKEADDYYEVKSLGYDEALRLLTLHAFHGNDIPDGYNDVVKEIVDYAKGVPLALEVLGSSLYGLSVEEWTSQLEKLRKMPDIGIQKVLRFSYDGLDEHDQKLLLYIVCFFTCQVVLTHGFEDVKMLLEPCGFATAIGLRILQDRSLISTKCSWVAFAVHDLIRQMCQEIVVREKEKPGKRRHLWDPNDIYHVLNNDKGTESIETISLDISEINNLSLTPNTFASMLNLNLLRISAPDEDDDENYDEDIPQPCLKFDNRVHAREDHTIHLPYNLRLLDWKFCPFKSLQPTGLENLVQLRMGCSSLQKLWDGTQNLPNLRKVHSSVFSLPKLVKLNMNFCKRLESLSGTDLEGQYKSWPPGF	692

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc181560g00002	692	Gene3D	-	6	175	IPR035897	-
	Stsc181560g00002	692	Gene3D	Ribonuclease Inhibitor	530	685	IPR032675	-
	Stsc181560g00002	692	SMART	till_3	11	147	IPR000157	GO:0007165
	Stsc181560g00002	692	Pfam	Leucine Rich Repeat	625	644	IPR011713	-
	Stsc181560g00002	692	SUPERFAMILY	Toll/Interleukin receptor TIR domain	3	150	IPR035897	-
	Stsc181560g00002	692	Gene3D	-	344	428	IPR042197	-
	Stsc181560g00002	692	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	183	438	IPR027417	-
	Stsc181560g00002	692	FunFam	Disease resistance protein (TIR-NBS-LRR class)	8	173	-	-
	Stsc181560g00002	692	Pfam	TIR domain	11	186	IPR000157	GO:0007165
	Stsc181560g00002	692	PRINTS	Disease resistance protein signature	284	298	-	-
	Stsc181560g00002	692	PRINTS	Disease resistance protein signature	208	223	-	-
	Stsc181560g00002	692	PRINTS	Disease resistance protein signature	657	673	-	-
	Stsc181560g00002	692	PRINTS	Disease resistance protein signature	379	393	-	-
	Stsc181560g00002	692	SUPERFAMILY	"Winged helix" DNA-binding domain	416	525	IPR036390	-
	Stsc181560g00002	692	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	12	676	IPR044974	GO:0006952
	Stsc181560g00002	692	SUPERFAMILY	L domain-like	490	677	-	-
	Stsc181560g00002	692	Pfam	NB-ARC domain	201	412	IPR002182	GO:0043531
	Stsc181560g00002	692	Gene3D	-	178	341	IPR027417	-
	Stsc181560g00002	692	ProSiteProfiles	TIR domain profile.	10	171	IPR000157	GO:0007165

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc181560g00002	Stsc-Chr181560	10496	13790	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc181560g00002	8	682	WRKY Transcription Factor Family	AT4G12020	29.683	1.38e-71	252

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc181560g00002	-		-	ahf:112753923	650.973