Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181559g00002 ATGACTACCCAACGTGAAGATACACTATTCCTTCTCAAAGAAACCACAGCTTCCATTTTGATCTTCTTTATCACCCATCTCTTCTTCCGTTCAATTATCCTCCGGAACCGGAAAGTTCTTCCACCTGGCCCAAGGGGGTGGCCAATTGTTGGCGCACTCCCACTCATGGGAAACATGCCTCACGTCACACTCTCCGAATTGGCCAAAAAATACGGGCCTGTGACGTACCTGAAAATGGGCTCAAACAACATGGTTGTTGCTTCGAGTCCCGGTGCGGCCCGGGCTTTCCTGAAAACCCTTGACCAAAACTTCTCGAACCGGCCTCCGAATGCGGGTGCAACTCACTTAGCTTATGACTCGCAGGACATGGTTTTTGCTGATTATGGAGCCAAGTGGAAGTTGCTTAGGAAACTAAGCAACTTGCACATGCTTGGTGGAAAGGCTCTCAACGATTGGGCTCATGTTCGTGAGAGAGAGATGGGGTACATGCTTGCTGCGATGCATGACTGCAGCAAGAAAGGCGAGGTGGTGGGGGTGGCCGAGATGCTGACATATGCCATGGCTAACATGATAGGCCAAGTGATACTAAGCAAGCGCGTGTTCCATACAAAGGGAACAGAGTCAAATGAGTTCAAGGAAATGGTAGTTGAGCTCATGACCGTTGCTGGGTACTTCAATATCGGAGATTTCATTCCTTTCTTGGCGTGGCTGGATCTGCAGGGAATAGAGCGAGGGATGAAGAAATTACACAAAAAGTTTGATGCAATATTGGCGAGGATGATTGAGGAACATGGAGCTTCTAGTCATAAGCGTAAGGCTAAACCTGATTTCTTGGACGTCCTCATGGCTCATCATCAAAGTCAAAACTCTGATGGTGGGGATCATTTGACCTTAACCAACATCAAGGCTCTCCTCTTGAATCTATTCGTAGCAGGCACTGATACATCGTCGAGTACTATAGAGTGGGCACTAGCAGAGATGTTGAGAAAACCCATTATCATGAAGAAAGTTCAAGAAGAAATGGACAAAGTGATAGGAAAGCAGAGAAGGCTCAAGGAATCCGACATGGAGAACCTTCCATACTTGCAGGCCATCTGCAAAGAGACATACAGAAAGCACCCATCAACACCACTGAATCTGCCTCGAATCTCAATTGAGTCATGCCAAGTGAACGGCTATTACATCCCCAAAAACACGAGGCTCCTTGTGAACATATGGGCCATAGGGCGTGACCCTCAAGTGTGGGAGAACCCTTTAGAATTCGAACCGGAAAGGTTTTTGGGTGGAAAGAATGAAAAGATTGATCCACGTGGAAATGATTTTGAGCTGATTCCGTTTGGTGCTGGGAGAAGGATTTGTGCTGGGACGAGAATGGGGATTGCGCTTGTTCAGTACGTGTTGGGAACCTTGGTGCATTCTTTTGATTGGAAGCTTCCGGATGAAGTTGTGGAATTGAACATGGAAGAATCCTTTGGGCTTGCCTTGCAGAAGAAGGTCACTCTTGCTGCTATAGTTAGCCCTAGGTTGGAGCAAAGTGCTTACACTCCTTAG 1551 0.4726 MTTQREDTLFLLKETTASILIFFITHLFFRSIILRNRKVLPPGPRGWPIVGALPLMGNMPHVTLSELAKKYGPVTYLKMGSNNMVVASSPGAARAFLKTLDQNFSNRPPNAGATHLAYDSQDMVFADYGAKWKLLRKLSNLHMLGGKALNDWAHVREREMGYMLAAMHDCSKKGEVVGVAEMLTYAMANMIGQVILSKRVFHTKGTESNEFKEMVVELMTVAGYFNIGDFIPFLAWLDLQGIERGMKKLHKKFDAILARMIEEHGASSHKRKAKPDFLDVLMAHHQSQNSDGGDHLTLTNIKALLLNLFVAGTDTSSSTIEWALAEMLRKPIIMKKVQEEMDKVIGKQRRLKESDMENLPYLQAICKETYRKHPSTPLNLPRISIESCQVNGYYIPKNTRLLVNIWAIGRDPQVWENPLEFEPERFLGGKNEKIDPRGNDFELIPFGAGRRICAGTRMGIALVQYVLGTLVHSFDWKLPDEVVELNMEESFGLALQKKVTLAAIVSPRLEQSAYTP 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181559g00002 516 CDD CYP75 72 508 - -
Stsc181559g00002 516 Coils Coil 334 354 - -
Stsc181559g00002 516 PRINTS E-class P450 group I signature 320 346 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181559g00002 516 PRINTS E-class P450 group I signature 443 453 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181559g00002 516 PRINTS E-class P450 group I signature 186 204 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181559g00002 516 PRINTS E-class P450 group I signature 363 381 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181559g00002 516 PRINTS E-class P450 group I signature 92 113 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181559g00002 516 PRINTS E-class P450 group I signature 453 476 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181559g00002 516 PRINTS E-class P450 group I signature 68 87 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181559g00002 516 PRINTS E-class P450 group I signature 404 428 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181559g00002 516 PRINTS E-class P450 group I signature 300 317 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181559g00002 516 Pfam Cytochrome P450 41 498 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181559g00002 516 FunFam Flavonoid 3',5'-hydroxylase 2 32 505 - -
Stsc181559g00002 516 Gene3D Cytochrome P450 33 506 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181559g00002 516 PRINTS P450 superfamily signature 364 375 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181559g00002 516 PRINTS P450 superfamily signature 444 453 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181559g00002 516 PRINTS P450 superfamily signature 311 328 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181559g00002 516 SUPERFAMILY Cytochrome P450 41 508 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181559g00002 516 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 446 455 IPR017972 GO:0005506|GO:0016705
Stsc181559g00002 516 PANTHER CYTOCHROME P450 98A9 20 514 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181559g00002 Stsc-Chr181559 24447 29658 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181559g00002 8 514 Cytochrome P450 AT5G07990 48.141 8.79e-177 506
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181559g00002 K13083 - gmx:547705 825.469