Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181556g00003 ATGGAAGGGGGGAATAGGGCGGAAGCGGAGCGGTGGCTGTACACGGCTAACAAGCTTCTGAGCGCACGTGACCTGCACGGAGCCCGGTCCTTCGCGATCAGGGCCCGCGAGTGTGACCCACGCTTCGAAGCAACGGAGCTACTTCTCACCGTAATCGACACCCTCCTCGCCGGCGAGGCTAGAATCAACGACCTCGTTGACTGCTACAGCATTCTCCAGGTTATTCGCTACTCGCACAATCTCGACTACATCGCCACCCAGTACCGCCGTCTCGCTTCCCTTCTTGACCCGCACCGCAACCCTTTCGCGTTCTCCGCCTACGCTTTCTCCCTCGTCCACGACGCATGGTCCGTACTCTCAAACCCTTCCAAGAAAGCAATCTTCGATAACGACCTCAGGCTCCTCACCGAACCTCCTCCTCCTCCTCTTCCTCCTCCTCCTCCTCCGCCTCAACCCGCGCCTGTTCCCGTCGTCCCTCAAGCTTTTCCAATCTTGCAGCAGAGGCAAAATCTCAACAACCACGACTTGAACCAGAACCACTTCCTTCATCAGAATCACAATCAGAATCAGGATCATTTCTTCCACCAGAATCATCAGCAGCAGCAGCAACAACAACAACTAGAGGAGCAACGGCGACGGCAACAAGAAGAGCAAGAGCAACGGCAACGGCAGCAACAACAAGAACAGCTGCAGCTGCAGCTGCAACAACAACAGCAACAGAAGCAGCTTCTTTCGCCGAGTAAAAACCCTAGTTCGACTGAAGCAACCAGGATTGTGGTGGTTGAGGAGGAGGAGAGGCCGAGTCAGGACAATGTGACTCAGCCGACGGAGCCAACTCGGCCAGCTAGGGCCACTGAGTCGAGTGAAACCGAGTTGAATGGAGCTTTCTGGACGGCGTGCCCTTACTGTTACGGTATGTTTGAGTATCCGAAGGTGTATGAGGAGTGTACCTTGCTGTGCCAGAGCTGCCGGAGGCCTTTCCACGCGTTGTCGGTGAGGTCGCCTCCGGAGTTGACCGGGAAAGACGGGTTCTTGTCTTTCTGCAGTTGGGGTTTCATGCCGGTTGGTTTTTCTGGTGATTTCAAGGATATAAGCGGTTCTGATTCTCAATGGAACCCTTTCTCTGCTTTGGTTCCTTGTCCTCTCAAAGGTGCTGACAAAAGGAGCCATCTGAGAGGGCCTTGGACTTACTATGATGATGATATCGCCGCGGCGTTTGTTGAGCTTTCTGATGCTACCGAGGATGATTCTGATGATTGCGATTGGAGGAATGTTAATGCGAATAAGAAGTCAGGGAAGAAGAGAAGAAGAAGGAATAGGAAGAGTTCTGCTGCTGCCACTGCTACTGGCAATGTCAGGACACCGGTGGAGAGGCCTAGGAGAGGGGTTCGTAACAATGCTGGCAATGCTGGTGTGGAAAATGGGGAAGCTGAAGCTGAAGCTGGCTCTGCAGCTGTGGCCGGCGTAGCAAGGTCTGAATCCGGCAAGAAAGCTGCATTGGCAAGTTTGAGGAGGAGGGGTGCTGGTAACTTGGGGAAATTGGATCTGAATGTGGAGTTTAGTAATGATGTGGAGGAGACTGCTCATGGAGTGCGCGGAAGGGCGGCGAATGCGGGTGGGACGGGTAATGCGGAGGATAACATTGAAGGGATTGGGTTCTTTGAGGGGCTTGATGAGTTCCTTAGCAGCTTGCCTATTCTCAATGGTGTTCCAGATGATAAGGTTAAGGGTCATTAG 1737 0.5354 MEGGNRAEAERWLYTANKLLSARDLHGARSFAIRARECDPRFEATELLLTVIDTLLAGEARINDLVDCYSILQVIRYSHNLDYIATQYRRLASLLDPHRNPFAFSAYAFSLVHDAWSVLSNPSKKAIFDNDLRLLTEPPPPPLPPPPPPPQPAPVPVVPQAFPILQQRQNLNNHDLNQNHFLHQNHNQNQDHFFHQNHQQQQQQQQLEEQRRRQQEEQEQRQRQQQQEQLQLQLQQQQQQKQLLSPSKNPSSTEATRIVVVEEEERPSQDNVTQPTEPTRPARATESSETELNGAFWTACPYCYGMFEYPKVYEECTLLCQSCRRPFHALSVRSPPELTGKDGFLSFCSWGFMPVGFSGDFKDISGSDSQWNPFSALVPCPLKGADKRSHLRGPWTYYDDDIAAAFVELSDATEDDSDDCDWRNVNANKKSGKKRRRRNRKSSAAATATGNVRTPVERPRRGVRNNAGNAGVENGEAEAEAGSAAVAGVARSESGKKAALASLRRRGAGNLGKLDLNVEFSNDVEETAHGVRGRAANAGGTGNAEDNIEGIGFFEGLDEFLSSLPILNGVPDDKVKGH 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181556g00003 578 MobiDBLite consensus disorder prediction 135 157 - -
Stsc181556g00003 578 ProSitePatterns Nt-dnaJ domain signature. 109 128 IPR018253 -
Stsc181556g00003 578 SUPERFAMILY Chaperone J-domain 61 132 IPR036869 -
Stsc181556g00003 578 MobiDBLite consensus disorder prediction 209 223 - -
Stsc181556g00003 578 Coils Coil 197 240 - -
Stsc181556g00003 578 MobiDBLite consensus disorder prediction 195 223 - -
Stsc181556g00003 578 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 1 466 - -
Stsc181556g00003 578 MobiDBLite consensus disorder prediction 271 289 - -
Stsc181556g00003 578 MobiDBLite consensus disorder prediction 133 157 - -
Stsc181556g00003 578 SMART dnaj_3 66 124 IPR001623 -
Stsc181556g00003 578 MobiDBLite consensus disorder prediction 260 289 - -
Stsc181556g00003 578 Gene3D DnaJ domain 63 133 IPR036869 -
Stsc181556g00003 578 ProSiteProfiles dnaJ domain profile. 67 132 IPR001623 -
Stsc181556g00003 578 CDD DnaJ 67 121 IPR001623 -
Stsc181556g00003 578 Pfam DnaJ domain 67 129 IPR001623 -
Stsc181556g00003 578 MobiDBLite consensus disorder prediction 424 476 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181556g00003 Stsc-Chr181556 28544 30572 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181556g00003 267 577 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT5G64360 40.694 1.61e-57 198
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181556g00003 - - aip:107623843 491.5