Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181556g00002 ATGACGAAACATAAGATAGAAATAAAGAAAATAGAGAACATAGCAGCAAGGCAGGTGGCTTTTTCAAAGAGGAGGAGAAGTCTGTTCAAGAAGGCTGAGGAGCTTTCAACTCTGTGCGATGCAGAGGTAGCGCTCCTTGTCTTTTCTGCTACTGGCAAACTCTTCCAACATTCCAGCTCAAGTGTAGAACAAGTAATTGAAATGCACAAAAATGTGCATTCAAGCATTGATAAGTCATATCTCCCTACAATGGAATTCCAGATGCGCAATGAAGTGGCTGATAAGACTCGTGAACTAAGAAAGTTAAATGGGGAAGAGCTCCAAGAATTAAAATTTCAAGAATTAATGAAACTTGAGGAACGTCTGCTCAAAGGTCTAACCCGTGTTTTAAAAGCAAAGGATGAAAGAATGGCAAATGATATCACTGCCCTCAAAAGAAAGGAAGAGGACCTTATGCGTGAGAATAGGAGATTGTTGCAGATTGCTGATGAACAAGGAACTTCCTTCAAGTTGGGTAGTGATTAA 525 0.4 MTKHKIEIKKIENIAARQVAFSKRRRSLFKKAEELSTLCDAEVALLVFSATGKLFQHSSSSVEQVIEMHKNVHSSIDKSYLPTMEFQMRNEVADKTRELRKLNGEELQELKFQELMKLEERLLKGLTRVLKAKDERMANDITALKRKEEDLMRENRRLLQIADEQGTSFKLGSD 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181556g00002 174 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Stsc181556g00002 174 CDD MADS_MEF2_like 5 75 IPR033896 GO:0000977|GO:0045944
Stsc181556g00002 174 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Stsc181556g00002 174 ProSiteProfiles K-box domain profile. 78 168 IPR002487 GO:0003700|GO:0005634|GO:0006355
Stsc181556g00002 174 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 56 IPR002100 GO:0003677|GO:0046983
Stsc181556g00002 174 PANTHER SERUM RESPONSE FACTOR HOMOLOG 4 142 - -
Stsc181556g00002 174 Pfam K-box region 87 160 IPR002487 GO:0003700|GO:0005634|GO:0006355
Stsc181556g00002 174 Coils Coil 141 164 - -
Stsc181556g00002 174 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Stsc181556g00002 174 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Stsc181556g00002 174 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Stsc181556g00002 174 SUPERFAMILY SRF-like 3 73 IPR036879 GO:0003677|GO:0046983
Stsc181556g00002 174 Gene3D - 13 80 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181556g00002 Stsc-Chr181556 14073 18799 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181556g00002 1 169 MADS-box Gene Family AT2G22540 48.876 6.65e-50 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Stsc181556g00002 K-box 5e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181556g00002 - - ahf:112784740 271.937