Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181555g00005 ATGATAAAGACCCACACAGTCTTTGTCGATGGTCTGCCACATGATATTGCCAAGATGTCACTGTACAAGATCTTTGGATGGGCAGGCGAGGTGGTAGATATATACGTTTCGAGGAAGAAGAGAAGGGGAAGCAATAGACCCTTTGCATTCATAAGGTTCGAGACTAAAGGGGGCGCGGAAAGGGCGATTCAGAAAATCAATGGAACGTATGTGGGTACTGCGAAGATGGAAGTGAAGTACGCAGAGAATCCAAAGGATAGTATGAAACTCAGAGGAGGTACAACGAATAAGTGGTTGCGGCCCCAATTCGAGGAAGGCAATGTCCCGAGGGATGTGAAGGAGAAAAAGGGTGATCCAACTACGGTGAAGACGAACACTGATGAGACAACGAGGAAATCCATTAAGGTTGAGGAGGATCCCACACAGGCGGATATTTTAAAAAGAAGCTTAGTAGCTGAGTCGATCAACACCATTCGATTTGGATGGGTAAAAGAGCTGATTGCGGAGAAATGGGAAGGCCCTGGTGAAGTTGAGTGTAGGGACGTGGGTCCGTTCAAATGCTTACTCACTTTTGAAACAGTTGAAGTGAGAGACTTTGCGTTGGGTAGTCCGGGACTACAATCACTGTTTTTCGAAATGAGACCCCAGTGGGGATTTTCATGGTCAAAGTCAAGAAGAGTATGGTTGGAGGTAGTTGGGATTCCTGTACATCTGTGGTCGGCAGAGACAATGACGAGGATTGGTAAGCTGTGGGGTAAGCCAGTAATGATGGATGAGCTTACTGACATTCTGATTGACTCCTATGAATGGGAATTCATTCATGAGTGGATAATTCTGGAGGAGGGTAACAGGAAGTTCGAGGTATATGTAAAGGAGTTTGGTAGAGAGATGTACAGTGCACAGGCTCACCCGGGCATATGCCATGAAAGTAGCCTGTGTAGAGACGGGAGTGGGACTCGCACTGAAGGAGAAAGTAGGGGATGCAACAGTGTGGTGGTCTCGAAAACTGCCATGGTAGGGGAAATGGAGAACGAGGGTGGAGATGGAAAGTCGGACAACGGAATCAGGGGTGATGACGTGGAAGATTTCGGGGACCCACTCATTGAAGACATGATCATGAGGCTGCCATTGGAAAACGATGGTGTGGGTAGTGGTGACCATAGTGCTTCAGGGGAAGGGATAATAAATGAAGTTAATTTTGAAAGGAAAGGAGTGGAAGATGAGAGGAATGATTTGATTGTGGCTGAAGATGATATTGCAGTTATTATTGGCAGTGGGCTTGAGCGTCAAGAGGCCCACAGCGCTATGTCAATTGAAGAGTTGGAGCCTCAAATAAGAAAGGGCTGTGAACTGATGCGACAGGCCGTGGATAATGTGGTAGAAGAGGAGGAGAGGGAGTGGCCCCAATCTGGGCCAAACCTGCAGAAAGGCCCAAATGAGTGTGAGGGAATTAATGGGCTAAGGCTGGATCCTATTCAATGTGAGTCTAGTGAAACATGCCCGTTCCCATCGGGCTTCGAGCCATCTATTGTGGAGTTGATGCAAAGAGATCTCTTACTGTAG 1563 0.4734 MIKTHTVFVDGLPHDIAKMSLYKIFGWAGEVVDIYVSRKKRRGSNRPFAFIRFETKGGAERAIQKINGTYVGTAKMEVKYAENPKDSMKLRGGTTNKWLRPQFEEGNVPRDVKEKKGDPTTVKTNTDETTRKSIKVEEDPTQADILKRSLVAESINTIRFGWVKELIAEKWEGPGEVECRDVGPFKCLLTFETVEVRDFALGSPGLQSLFFEMRPQWGFSWSKSRRVWLEVVGIPVHLWSAETMTRIGKLWGKPVMMDELTDILIDSYEWEFIHEWIILEEGNRKFEVYVKEFGREMYSAQAHPGICHESSLCRDGSGTRTEGESRGCNSVVVSKTAMVGEMENEGGDGKSDNGIRGDDVEDFGDPLIEDMIMRLPLENDGVGSGDHSASGEGIINEVNFERKGVEDERNDLIVAEDDIAVIIGSGLERQEAHSAMSIEELEPQIRKGCELMRQAVDNVVEEEEREWPQSGPNLQKGPNECEGINGLRLDPIQCESSETCPFPSGFEPSIVELMQRDLLL 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181555g00005 520 Pfam Domain of unknown function (DUF4283) 147 261 IPR025558 -
Stsc181555g00005 520 SUPERFAMILY RNA-binding domain, RBD 3 97 IPR035979 GO:0003676
Stsc181555g00005 520 CDD RRM_SF 7 79 - -
Stsc181555g00005 520 Gene3D - 2 118 IPR012677 -
Stsc181555g00005 520 SMART rrm1_1 6 79 IPR000504 GO:0003723
Stsc181555g00005 520 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 5 83 IPR000504 GO:0003723
Stsc181555g00005 520 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN RZ1A 4 97 - -
Stsc181555g00005 520 MobiDBLite consensus disorder prediction 109 131 - -
Stsc181555g00005 520 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 7 74 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181555g00005 Stsc-Chr181555 33721 35310 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181555g00005 6 138 Eukaryotic Initiation Factors Gene Family AT1G34140 30.827 2.95e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181555g00005 - K13208 ahf:112794598 206.068