Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181555g00004 ATGCTTTTTGCAATGGAGTTGGGAATTTCAGTGGTGTTTCCATTGGCTGTTAAGACTGCATTTGAGCTTGGAATCTTTGACATAATAGCCAAAGGTGGTGGTGAACATGCAAAGCTCTCAGCTCAAGACATTGCTTCACAGATTGGCAGCAAGAACCCTAATGCACCATCAATGGTGGATCGTCTTCTTAGGCTTCTTGCAAGTCATTCTTTGTTGTCTTCTTCATCGCTTCTTCCTCAAGTTGATAATCGCCACCAAAATGATCTACAAGTCACCAAAGATGAAGATGGTCAAGAACATTGGCTTATTGCATCTCCTCAGAAGACTACGTATAGTCTCACAGCTGCTTCCAAATATTTTGCAACTGATGATTATGGTTTTACTTTTGGACATTCTTTGAACTTGATTCTAGATAAGATCTACTTGGAAACCTGGTCAGTTTACTACAACTTTTAA 456 0.3969 MLFAMELGISVVFPLAVKTAFELGIFDIIAKGGGEHAKLSAQDIASQIGSKNPNAPSMVDRLLRLLASHSLLSSSSLLPQVDNRHQNDLQVTKDEDGQEHWLIASPQKTTYSLTAASKYFATDDYGFTFGHSLNLILDKIYLETWSVYYNF 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181555g00004 151 FunFam Caffeic acid 3-O-methyltransferase 1 120 - -
Stsc181555g00004 151 SUPERFAMILY "Winged helix" DNA-binding domain 2 75 IPR036390 -
Stsc181555g00004 151 PANTHER O-METHYLTRANSFERASE 7 145 IPR016461 GO:0008168
Stsc181555g00004 151 Gene3D - 10 150 IPR036388 -
Stsc181555g00004 151 Pfam Dimerisation domain 16 67 IPR012967 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181555g00004 Stsc-Chr181555 27563 29363 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181555g00004 2 145 Monolignol Biosynthesis Gene Families AT5G54160 34.722 2.96e-19 80.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181555g00004 K13066 - aip:107626705 181.03