Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181555g00003 ATGTCATTTGCAGCTGGAAATATTGCAAAACCATGTGCTTTTGTTGATTTTCTGCTTGTTCTTCACATTTTAGTCCATCAAGTGATGAAGAATTGCAGTAAGGCCATTCCTGAAGATGGAAAAGTGATAGTTGTAGACACAATGGTTATGGTTCCGGTTTGGCCGGAGAATACAACAGCTGCTAAGGTTGCTTTCAAATGTGACTTAATTATGATGACTCAAAACATTGGAGGAAAAGAGAGAACAAAACATGAGTTCATTCAATTGGCCAATGATTCTGGATTTTCTGCCATCAAATTTGTGTGCTCTGTTTCTGGATATTGGGTTATGGAGTTCTACAAGTAA 345 0.3768 MSFAAGNIAKPCAFVDFLLVLHILVHQVMKNCSKAIPEDGKVIVVDTMVMVPVWPENTTAAKVAFKCDLIMMTQNIGGKERTKHEFIQLANDSGFSAIKFVCSVSGYWVMEFYK 114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181555g00003 114 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 4 113 IPR029063 -
Stsc181555g00003 114 Pfam O-methyltransferase domain 25 96 IPR001077 GO:0008171
Stsc181555g00003 114 PANTHER O-METHYLTRANSFERASE 27 112 IPR016461 GO:0008168
Stsc181555g00003 114 Gene3D Vaccinia Virus protein VP39 27 104 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181555g00003 Stsc-Chr181555 22456 23038 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181555g00003 27 114 Monolignol Biosynthesis Gene Families AT1G76790 44.944 2.30e-20 82.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181555g00003 K13066 - adu:107473077 142.51