Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181552g00004 ATGGAGAGAGACATGCTTCCGTTGTCGGAACAAGCAAGGCCTCTTCCTCACAACACTAACGCTGCCGTTTCTTGGACGGAGCCCTTACTTGGAGAAGAAAGCACTGACATTGGAATTCCCATGAATGCCCCTCTCAGCTCCTTCAAATCCATACCCCAACCGGGTCAAATTACCATAAACCCCTTCCCCTTCCTCCAACAACAAACCGTACCCACTACTGCTTCTGCTGCTGCTAATTCTAATGATAACAACAACTTTCTCACACACCAAAATATGGACAATTTTGCCCTCGAACACTCTTTCTCTACTCTCAAACCCTCGTTCTTCACAACCACCACCACCACCACCAACAATCCTTTTGATAATGCCTTCGATTTCGGACCTGACAACGGTTTCTTCTTCTCCGGTAACCATTCTTCCACTTCCCCTCTCTTGATGGCTTTTTCTCAGCCTCTAATTGGCTCCGCTGACATGACTTCCGGTACTGAATTCCCGCCGGCGACGCGGTTGCTCCCGGCGGGGGACGATGCCGTGGCGCTGGGTGCTGGATTTGAAATGGAGCCATTTGGTGGCTCTGGAAATGCTCTGTTTTCGAGCAGGGGAAAGGGATTGAGGCCTCTTGAGGTGGCTCCGACGGTCGGTGCGCCTCCCACGCTCTTCCAGAAGCGTGCTGCGCTCCGTCGAGGCTCCGGCGGGTCCGAGAGTCTCGAGGCTTTGGGGATGGGGAGTTTGGAGAGGAAATGGGGAGAGGGGGAAGTTGAAGAGGGGAGCATTGAAGCTTCAGTGTGGAATTATGATTCTGATGAGAATGTTGAGAGTGGTAGTAAGGCGGTGGTGGTGGTGGAGGAGAGCGGGGAAGGGAATGGGAATTTGAGCTTGAGTGGTGGCGGTGGCGGTGTCAATGGTGGAGATCAGAAAGGGAAGAAGAAGGGGATGCCAGCGAAGAATCTCATGGCCGAGAGGCGGCGCCGGAAGAAGCTTAATGATAGGTTGTACATGCTTAGGTCTGTTGTGCCAAAGATTAGCAAGCGGATTAATGATCTTCACAATGAACTGGAGTCTTCTCCACCTGGCTCTGTGATGCAATCTTCCACCACCACCAGCCTTCAGCCTTTGACACCCACGCCGCAAACCCTTCCGTGTCGGGTGAAGGAGGAACTCTATCCTGGTGTCTTACCAAGCCCCAAAAACCAACCTGCAAAGGTGGAAGTTAGGGTAAGAGAAGGGAGAGCTGTCAACATTCACATGTTTTGTACTCGCCGACCAGGTCTTCTGCTTTCAACGATGCGGGCTCTGGATAACCTCGGATTAGATGTTCAGCAGGCTGTTATTAGCTGCTTCAATGGCTTTGCTTTAGACGTCTTCAGAGCTGAGCAATGCAGAGAAGGGCAGGATGTTCTTCCTGAGGAAATCAAAGCAGTGTTGCTGGATTCAGCAGGGATCCATGACATGATGTGA 1458 0.5185 MERDMLPLSEQARPLPHNTNAAVSWTEPLLGEESTDIGIPMNAPLSSFKSIPQPGQITINPFPFLQQQTVPTTASAAANSNDNNNFLTHQNMDNFALEHSFSTLKPSFFTTTTTTTNNPFDNAFDFGPDNGFFFSGNHSSTSPLLMAFSQPLIGSADMTSGTEFPPATRLLPAGDDAVALGAGFEMEPFGGSGNALFSSRGKGLRPLEVAPTVGAPPTLFQKRAALRRGSGGSESLEALGMGSLERKWGEGEVEEGSIEASVWNYDSDENVESGSKAVVVVEESGEGNGNLSLSGGGGGVNGGDQKGKKKGMPAKNLMAERRRRKKLNDRLYMLRSVVPKISKRINDLHNELESSPPGSVMQSSTTTSLQPLTPTPQTLPCRVKEELYPGVLPSPKNQPAKVEVRVREGRAVNIHMFCTRRPGLLLSTMRALDNLGLDVQQAVISCFNGFALDVFRAEQCREGQDVLPEEIKAVLLDSAGIHDMM 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181552g00004 485 CDD ACT_UUR-ACR-like 414 474 - -
Stsc181552g00004 485 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 308 346 IPR036638 GO:0046983
Stsc181552g00004 485 Pfam Helix-loop-helix DNA-binding domain 318 345 IPR011598 GO:0046983
Stsc181552g00004 485 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 311 372 IPR011598 GO:0046983
Stsc181552g00004 485 MobiDBLite consensus disorder prediction 1 20 - -
Stsc181552g00004 485 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 143 481 - -
Stsc181552g00004 485 Gene3D - 305 374 IPR036638 GO:0046983
Stsc181552g00004 485 MobiDBLite consensus disorder prediction 287 312 - -
Stsc181552g00004 485 MobiDBLite consensus disorder prediction 353 376 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181552g00004 Stsc-Chr181552 40483 43889 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181552g00004 115 458 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 54.570 6.36e-106 322
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc181552g00004 HLH 0.00013 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181552g00004 - - aip:107647300 647.891