Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181550g00007 ATGGCTACAGCACTTGTGGGTGGAGCTGTTCTGTCTTCCATTTTTAATGTTGTTTTTGACAGGATGTCCTCACCCGAATTTGCCAACTGGATCAAAGGCAAGAAGCTTACCCAGAAGCTGCTTGAAAGGTTGAAGACTACTCTTTATGCTGTTCAAGCCTTTCTCATCGATGCTGAGCAGAAGCAGATCAAGGAGAGAGCTGTCAAGGACTGGCTTCATAATCTCAAAGATTCTATGTATGTTGCTGATGATTTGTTGGACGAAGTCTTCACCAAAGCTGCCACTCAGAAGGATCCAGGTACCTTCTTCTCTCGTTATCTGAATTTGCAAGATAGGGAGATAGCAAATCGGATGGAAGAAATAGTTGATAGGATAGAATTTATTGTTAGGCAAAAAGACACTCTTGGTCTCAGAGAGATTCCTATGGAGAATAGGTCATGGAGGATTACAACATCTCTAGTTGATAGATCTAATGTGTATGGCAGGGAAGATGACAAGGCAGCCATAGTGAAATTGTTGTTGGATGATGATGATGATGACAATGGTGATGGTGATAATGATATATCTGTGGTTCCCATTGTGGGCATGGGTGGAATAGGAAAGACTACTTTGGCCCAACTGGTTTACCACGATGATGAAGTGAAGGAGAATTTCGATTTTCGAGGTTGGGTTTGTGTGTCTGAAGAGTTTGATATCATGAAGGTCACCAAGAATATACTTGAGGCAATAACAAAGAGTTTTTGTAACTTGAAAAACTTGAATTTACTCCAACAAGATTTAAAGGAAAAGTTGTCAGGGAAAAGATTCTTTATTGTCTTGGACGATGTATGGAATGAGGACTATTACGATTTGAATGCGCTTCTAAAACCTTTTCAAAATGGGCATAAGGGAAGTAAAATTCTCATAACTACTAGGAGTAAGAAGGTGGCTTCTATGGTGCAAACTGTTTTACCTCATGAACTAAATTTGTTGTCTGATGAAGATTGTTGGTTAGTGTTTTCGAAACATGCACGTCTTTCCATTGACTCTATTCAGAATCCAACTTTGGAAAAGGTCGGTAGAGATATCGTAAAGAAGTGTAATGGATTGCCATTGGCAGCTCAAGCCCTTGGAGGTTTATTGCGTGGAAACTCTCATGTCAAGGATTGGAACCATGTATTGAAGAGTGAGATATGGGGATCCTCTGATGATAGGATAAAAGTTATACCTGCATTAAGAATCAATTATTACTATCTTCCTTCATGTTTGAAAGAGTGCTTTGTTTATTGTTCCTTATATCCCAAGGACTATGAATTTGATAAGGAGGAGCTGGTTTTGTTATGGATGGCTGAAAATTTTTTACAACCAGTAAGTAAAAAGACTTTAGAAGAAGTTGGTGAGGAATATTTTGATGAATTAATTGCGAGATCATTTTTCCAACCTCATAGTACTCGTGAAAAGAAATTTGTGATGCATGATCTCGTGCATGATTTGGCAATGATCTTCGCTGGAAAATTCTATTTTCGAGCTGAAGAGCTGGAGAATGGTGATGAGGTTGATAGTAAAACTCGCCATTTGTCACACAATGCCAAAGGAAATTATCCAATCTCAAAACTTTTTGGAGATTGCGAGGGGGTGAAACATACAAGGACATTTCTTGAAATCAATTTGGAGTCACGGATTCCATTCAACATGGGAAACACACCTTGTATCTTACTCTCACACATGAAGTGCTTGAGAGTTTTGTCGCTTAAATGCTTTCCTCTTGAGTCACTGCCCGATTCAATAGTTGAGTTGATTCATTTGCGTTACTTGGATTTGTCTCATACCTTAATTGTGACGTTGCCGGAGTCACTAGGTAACCTGTACAATTTGCAGACCTTGAAGCTGGTTAGATGTGCAAATCTGAAAATGCTTCCAACTGGTATGCAAAATCTTGTCAATTTGCGTTACCTTGATATTAGCGGGACTTGTTTGCATGAGATGCCGAAAGGCATGAGCAAATTGAAAAGTTTGCAGTTTTTAAGCGACTATATTGTTGGGAAGCATGAAGGGAACATGATCAAGGAATTGGGAGCACTTGCAAATCTACACGAATCCATGTCTATTGCCAAATTGGAGAATGTCGACAGCAGCATCGAATCTTCAGAGGCAAGAATGTTTGATAAGGATGGGATTAGCTGTTTGAGGCTGGGATGGTCATCAGATAAGGATGAGAATATAGCTGATTCCCAAATAGAAAGAGATATACTGGACAAGTTACAACCTCACAGTAATTTGAAAGAACTAGAAATCATGGGTTACAGGGGTACAACATTTCCAGATTGGTTGGGACATTCTTCTTACCACAACATCACCACACTAACTCTGCGTGGTTGTAGCAATTGTTGTATGCTCCCTTCACTTGGACAGTTGCCATTTTTGAAGCACCTATTAATTTCAACATGTAAAAGTCTTGGGACTGTGGGTACTGAGTTTTACCGAAACGATGAATGTTGTTTGGAAACACCATTTCCAATGCTTGAAACTCTTTCATTTGGGTCAATGCCTTGCTGGACGGAATGGTGTTCGTCAGAGTTCAATGCATTTCCTCGCCTTCGGGAGCTTATCATAAGGAATTGTCCCATGTTGAGAGGAGATTTGCCCAATCATCTACCATCTTTGCAATCACTTAAGATTATCAAATGCCGGCAGCTGAGTTCCTGTCTTCCAAGAGTCCCTCTGATGACCTCTTTACACATAGTTGGTAGCAATAAAGTGAGAATTGGGGAGCTACCTCCTTTGCTGCGCCATCTATCTGTTAAAGGAAACCATCAAGTGGAGTCTGTGGTGGAGGCCATTAAGAACATGCAACTGACTTGCCTCACACATCTACACATCTTAGGTTGTGTCTCCCACATTTCATTTCCCGTGAGTTGTATTCCTGCATCACTACAAGACTTGATGATATGGAATTGCAGAAAACTAGAATTCCAAATGGAAGGCCAACATCACTCGCTGCGGATACTTTCGATAAGTAAAAGCTGTGATTCAGTTACATCCTTCTCATTGTTGGATTCCTTTCCTAATCTCATGAATGTTGAAATCATGTACTGTGAAAAGATGGAGTCTATTGTGGTGTCACGCTCTCTTTCGTGTCTCCGTTCTTTAATCATCAACAATTGTGGGAGTTTGATATCCATGACAACACTATGGATGGCAGCACCTCAGCTAGAGGATCTCACAATACTGCGTTGTCCGGAGATTGATTTGTCTGCTTCAGGGGATCCGCTGCGTAGCCTGAGATATCTTGCCATCAGCTACTGCAACAAACTGGTCAGCTCTACAGCATTGATGAGTTCACAATTTCATGGTCTTACTGATCTTCGCATTGTTGGTGAATGTGACGAGACTGCGAAGTGCCTCCCTAAAGAAGGTTGGTTACCTGCCTCCCTTGAGTCTCTTTCATTGGAAGGCATTAAAAGTGTGGAGACGCTGGAATGCAAGGGACTTGCCCACCTCACCTCCCTTCGAAACTTGAATATCAAGGAATGTCCCAAGTTGGAGAATATTGAAGGAGAAAAGCTGTCTGCATCTCTAATGCGACTCATCATCATTCAAAGCCCTTTACTGGGTAAACGGTGCCAGATGAAGGATCCACAGACCAAGGATCTTAAGGGTATATCAATTGATATTCTAGTTCCAGGGATGCTGGTTAATGCAAGTGTGAAGTCAATTCTTGAGAATGGTGTTATGTTATCATTTCTCACATACTTCACTGGAACTGTTATCTGTTTCATTTGCAAACAAACAAGCTATCCTACAAAAAAAATAGAGGATCAGGATTGTTGCTTGAAGCTCCTTCAATTCCAGAGTCAGCTCCTGCTTTTGACAGTATTGTTGATATTGATGAAGAGATCTCAAGGTAATCGCGTTCGAGTTTGTATTCCGGGATTAAGGCTTTTGGAAGGACTTGCCATAGGAAGTTTGAAGGCTAGTGCTCTTGAAGAATGTGTTTACTCATTCTGA 3987 0.4076 MATALVGGAVLSSIFNVVFDRMSSPEFANWIKGKKLTQKLLERLKTTLYAVQAFLIDAEQKQIKERAVKDWLHNLKDSMYVADDLLDEVFTKAATQKDPGTFFSRYLNLQDREIANRMEEIVDRIEFIVRQKDTLGLREIPMENRSWRITTSLVDRSNVYGREDDKAAIVKLLLDDDDDDNGDGDNDISVVPIVGMGGIGKTTLAQLVYHDDEVKENFDFRGWVCVSEEFDIMKVTKNILEAITKSFCNLKNLNLLQQDLKEKLSGKRFFIVLDDVWNEDYYDLNALLKPFQNGHKGSKILITTRSKKVASMVQTVLPHELNLLSDEDCWLVFSKHARLSIDSIQNPTLEKVGRDIVKKCNGLPLAAQALGGLLRGNSHVKDWNHVLKSEIWGSSDDRIKVIPALRINYYYLPSCLKECFVYCSLYPKDYEFDKEELVLLWMAENFLQPVSKKTLEEVGEEYFDELIARSFFQPHSTREKKFVMHDLVHDLAMIFAGKFYFRAEELENGDEVDSKTRHLSHNAKGNYPISKLFGDCEGVKHTRTFLEINLESRIPFNMGNTPCILLSHMKCLRVLSLKCFPLESLPDSIVELIHLRYLDLSHTLIVTLPESLGNLYNLQTLKLVRCANLKMLPTGMQNLVNLRYLDISGTCLHEMPKGMSKLKSLQFLSDYIVGKHEGNMIKELGALANLHESMSIAKLENVDSSIESSEARMFDKDGISCLRLGWSSDKDENIADSQIERDILDKLQPHSNLKELEIMGYRGTTFPDWLGHSSYHNITTLTLRGCSNCCMLPSLGQLPFLKHLLISTCKSLGTVGTEFYRNDECCLETPFPMLETLSFGSMPCWTEWCSSEFNAFPRLRELIIRNCPMLRGDLPNHLPSLQSLKIIKCRQLSSCLPRVPLMTSLHIVGSNKVRIGELPPLLRHLSVKGNHQVESVVEAIKNMQLTCLTHLHILGCVSHISFPVSCIPASLQDLMIWNCRKLEFQMEGQHHSLRILSISKSCDSVTSFSLLDSFPNLMNVEIMYCEKMESIVVSRSLSCLRSLIINNCGSLISMTTLWMAAPQLEDLTILRCPEIDLSASGDPLRSLRYLAISYCNKLVSSTALMSSQFHGLTDLRIVGECDETAKCLPKEGWLPASLESLSLEGIKSVETLECKGLAHLTSLRNLNIKECPKLENIEGEKLSASLMRLIIIQSPLLGKRCQMKDPQTKDLKGISIDILVPGMLVNASVKSILENGVMLSFLTYFTGTVICFICKQTSYPTKKIEDQDCCLKLLQFQSQLLLLTVLLILMKRSQGNRVRVCIPGLRLLEGLAIGSLKASALEECVYSF 1328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181550g00007 1328 Gene3D - 28 139 - -
Stsc181550g00007 1328 SMART LRR_typ_2 592 615 IPR003591 -
Stsc181550g00007 1328 SMART LRR_typ_2 639 662 IPR003591 -
Stsc181550g00007 1328 FunFam Probable disease resistance protein At1g63360 409 494 - -
Stsc181550g00007 1328 FunFam Probable disease resistance protein At1g61300 145 316 - -
Stsc181550g00007 1328 PRINTS Disease resistance protein signature 613 629 - -
Stsc181550g00007 1328 PRINTS Disease resistance protein signature 263 277 - -
Stsc181550g00007 1328 PRINTS Disease resistance protein signature 190 205 - -
Stsc181550g00007 1328 PRINTS Disease resistance protein signature 360 374 - -
Stsc181550g00007 1328 PANTHER DISEASE RESISTANCE PROTEIN RP 41 889 IPR044974 GO:0006952
Stsc181550g00007 1328 Pfam NB-ARC domain 185 388 IPR002182 GO:0043531
Stsc181550g00007 1328 SUPERFAMILY L domain-like 548 979 - -
Stsc181550g00007 1328 Gene3D Ribonuclease Inhibitor 983 1078 IPR032675 -
Stsc181550g00007 1328 Gene3D Ribonuclease Inhibitor 1079 1203 IPR032675 -
Stsc181550g00007 1328 Gene3D - 408 493 IPR036388 -
Stsc181550g00007 1328 Gene3D - 144 317 IPR027417 -
Stsc181550g00007 1328 Gene3D - 323 407 IPR042197 -
Stsc181550g00007 1328 Gene3D Ribonuclease Inhibitor 541 920 IPR032675 -
Stsc181550g00007 1328 Pfam Rx N-terminal domain 10 98 IPR041118 -
Stsc181550g00007 1328 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 145 423 IPR027417 -
Stsc181550g00007 1328 SUPERFAMILY L domain-like 877 1206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181550g00007 Stsc-Chr181550 48709 54396 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181550g00007 187 656 WRKY Transcription Factor Family AT5G45050 23.616 6.02e-13 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181550g00007 - - aip:107626318 1565.44