Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181550g00006 ATGGCTTGGGATTACAGATTGGACAACACTGACGATGACTATATAGACTTGTTCTTCAATGATGTGGAGAAAGAGTGCAATTCCCGTGATCACAATAACAATAGTGAAGTCTCAAGATCAGAGAGTCAGCTATGTATACCAACAGACAGAGTAGAAGATTTGGAATGGTTCCCGAACTTTGAAGATGATTTGATATCTTTGAAGAGCATAGAAGACTTCATATCACAGCAGCAGCAGCAGAGGAGCTGTTATTTTTCCATTGATGATGAGAATTCAAATCAATCTAGCGAAAGCGATGATTATTTTCCTGCAATTCGCCACCAACAACAAGAAATCAACTCAAAACGTTGCATCAAAGATGACGACGACCATGAGAATGTGTTGATGGATATGAATGGTAGTACAAGAAAGAAAAACTTCAGGACTAAGCTTCGCAAGAAGCCCAGGAATAATCTCATATTTGAGACCAAAAGATGTACTCATTGTGATGCAGATGAAACTCCTCAATGGAGAAACGGACCCATGGGACCGAAAACGTTGTGTAATGCATGTGGTGTACGATATAAATCTGGCCGGCTCTTGCCGGAGTATCGTCCCAAGGCTAGTCCGTCTTTCGATAGCAGTAAACATTCTAACTATCACAGGAAGATAGTAAGGAGTCGCCACGATGTTGAGGAAGGAGAAAAAGCTGCTGACAACGGAAACGTCAACTGCAAACTCGATGTAGCAGAGGCCGGAATGGCGTTGGAAAGGACGATGGCAGGATCGGAGCGAGCTTCCTGGCCAGTGATTACAAAGATTCTGGAGCGGATGAAGGAGCATAAAGCGAGATCCTAG 837 0.4325 MAWDYRLDNTDDDYIDLFFNDVEKECNSRDHNNNSEVSRSESQLCIPTDRVEDLEWFPNFEDDLISLKSIEDFISQQQQQRSCYFSIDDENSNQSSESDDYFPAIRHQQQEINSKRCIKDDDDHENVLMDMNGSTRKKNFRTKLRKKPRNNLIFETKRCTHCDADETPQWRNGPMGPKTLCNACGVRYKSGRLLPEYRPKASPSFDSSKHSNYHRKIVRSRHDVEEGEKAADNGNVNCKLDVAEAGMALERTMAGSERASWPVITKILERMKEHKARS 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181550g00006 278 ProSitePatterns GATA-type zinc finger domain. 159 184 IPR000679 GO:0006355|GO:0043565
Stsc181550g00006 278 ProSiteProfiles GATA-type zinc finger domain profile. 153 189 IPR000679 GO:0006355|GO:0043565
Stsc181550g00006 278 FunFam GATA transcription factor 154 203 - -
Stsc181550g00006 278 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 157 216 - -
Stsc181550g00006 278 SMART GATA_3 153 203 IPR000679 GO:0006355|GO:0043565
Stsc181550g00006 278 PANTHER GATA TRANSCRIPTION FACTOR 76 223 - -
Stsc181550g00006 278 Pfam GATA zinc finger 159 193 IPR000679 GO:0006355|GO:0043565
Stsc181550g00006 278 CDD ZnF_GATA 158 209 IPR000679 GO:0006355|GO:0043565
Stsc181550g00006 278 Gene3D - 154 223 IPR013088 GO:0006355|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181550g00006 Stsc-Chr181550 39209 45490 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181550g00006 46 246 C2C2-Gata Transcription Factor Family AT4G34680 33.333 5.85e-33 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Stsc181550g00006 GATA 4.7e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181550g00006 - - aip:107611719 272.707