Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181549g00005 ATGACTCTTGATGAGTTGGTTGCAAAGTTACAAGTTCCATTAGCTAAGATTAGTGGTGTGCATCGCTTAATGCGTTATCTTGCACACATTGGATTCTTTGATGTGGTTAGGATCCAAGAAAATCAAGAAGAGAAGGAAGCATATGCTCTCACTAACTCATCGGAGCTTCTTGTTAGAGGCACTAACCATTGTTTATCTTCTGTGGCTGAATGGGTTCTTGATCCCTCTATTTTAACTTCCTATCATCACTTGGGGAAGTGGATTCATGACGACGGAGATCAAACTCCGTTTGCCTTGGCCTTAGGAACAGGTATTTGGGACTTTCTTAGCAAAAGCCCCACACATATGAGATCCTTCAATGATGCAACTGCTAATGACTCTCAAATCATAAACTTGGCATTGGAAAATCATGGTGCTGTCTTTGAAGGGTTGGAATCAATTGTAGATGTTGCTGGAGGAACTGGAATGATAGCCAAGTATCTTTCTGAGACATTTCCACATTTGAAATGCATAGTTTTTGACCTTCCAAAAGTCGTAGAAAATTTGTCAGGAAGCAACAATTTGAGCTATGTTGGTGGGGACATGTTTCAATCTATCCCTAAGGCTGATGCAGTTTTACTTAAGTGGATTTTACATGATTGGAGTGATGATGATTGCATAAAGATATTGAACAAGTGCAAAGATGCTGTATCAAATAACAAGAAAAAAGGAAAAATAATAATCATAGATATTGTGATAGACAATGGAAGGCAAGATGTGTTTGACACTCAAGCAAAACTTCAGATGGATTTAATTGTGACAACATATTATAATGGAAGAGAGAGAACTGCAGAAGAATGGAAGAAACTTTTTATAGAAACAGGCTGCCATAATTACAAAATTTCACCTTTAACAGCATATGTGTCTCTTATTGAGGTTAATCTTTAG 927 0.3743 MTLDELVAKLQVPLAKISGVHRLMRYLAHIGFFDVVRIQENQEEKEAYALTNSSELLVRGTNHCLSSVAEWVLDPSILTSYHHLGKWIHDDGDQTPFALALGTGIWDFLSKSPTHMRSFNDATANDSQIINLALENHGAVFEGLESIVDVAGGTGMIAKYLSETFPHLKCIVFDLPKVVENLSGSNNLSYVGGDMFQSIPKADAVLLKWILHDWSDDDCIKILNKCKDAVSNNKKKGKIIIIDIVIDNGRQDVFDTQAKLQMDLIVTTYYNGRERTAEEWKKLFIETGCHNYKISPLTAYVSLIEVNL 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181549g00005 308 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 1 308 IPR016461 GO:0008168
Stsc181549g00005 308 FunFam O-methyltransferase ZRP4 59 307 - -
Stsc181549g00005 308 Pfam O-methyltransferase domain 81 288 IPR001077 GO:0008171
Stsc181549g00005 308 PANTHER O-METHYLTRANSFERASE 1 289 IPR016461 GO:0008168
Stsc181549g00005 308 Gene3D - 1 57 IPR036388 -
Stsc181549g00005 308 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 63 306 IPR029063 -
Stsc181549g00005 308 Gene3D Vaccinia Virus protein VP39 59 307 IPR029063 -
Stsc181549g00005 308 PIRSF O-mtase 1 308 IPR016461 GO:0008168
Stsc181549g00005 308 SUPERFAMILY "Winged helix" DNA-binding domain 1 60 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181549g00005 Stsc-Chr181549 40620 43510 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181549g00005 74 306 Monolignol Biosynthesis Gene Families AT5G54160 34.894 4.62e-41 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181549g00005 K22588 - ag:AAC49926 349.362