Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181548g00007 ATGGGAAGAGCTCCTTGCTGTGATAAGGCAAGTGTTAAGAGAGGTCCATGGTCACCTGAAGAAGACACAAAGCTCAAAGAGTATATAGAGAAGCATGGAACTGGTGGAAACTGGATTGCTCTTCCTCAAAAAGCTGGTCTAAAGAGGTGTGGAAAAAGCTGTAGATTGAGATGGCTTAACTATTTGAGGCCTAACATTAAGCATGGAGAATTCTCAGATGAGGAAGACAGAATCATCTGCAGTCTTTATGCTAATATTGGAAGCAGATGGTCAATTATAGCAGCACAGTTACCAGGAAGGACTGACAATGATATCAAGAACTATTGGAACACCAAGCTCAAGAAGAAGCTCATGGCTTTGCTTCCTCATCATCATCAACAAAACCCACCATCATCATTCTTTCCCTACTCTTCTTCTTCTCTTCAAACAACAGATGATAATAATCATCACTATTACTATTACAACACTAGTGCTGCTGGTGCTTCTACTATTCCACCAACCATGTCTTTCACTGCTGTTCCTCCTCCTCCTCCTTCAACTACTACTAGTTATTATTATAATTACACTACTGCTACTAATACTGCAGCAGCATCATCAATAATGTCTCTCCCTTTCTACCAAAACCAAGAACAAGAGCATTATCATACTCAGCAGCAGCCATTGTTGATAAGCCCCATGCAGCTTCAACAGTATTACCCTATGTTTGGGAGCGAAGGAAGCTGCAGCTCATCTGATGGAAGCTGTAGCTATGGTGGGAATAAGGAGATTAAGAAAGAAGAAATGATGGGGTTTCATCATCATCATGATGAAGAGGGTGTTATTATTATGGGTTGTCAGGGAGAAGAAGGCATTAACCAGTGGACAGAGAAGCTAGACAAGTGGTTGGGGGGAGGAAACCCATTGGACTATGATTTGGAGGTGATTAAACAACTTGTTATTAGCAGCAATGATGGGTTGTTCAGTGTTGATGAAAACAAGACACAAGAGGGGATGATGATGAACAAGTCCATCTACAAAGTACTCTGA 1026 0.4133 MGRAPCCDKASVKRGPWSPEEDTKLKEYIEKHGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPNIKHGEFSDEEDRIICSLYANIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKLMALLPHHHQQNPPSSFFPYSSSSLQTTDDNNHHYYYYNTSAAGASTIPPTMSFTAVPPPPPSTTTSYYYNYTTATNTAAASSIMSLPFYQNQEQEHYHTQQQPLLISPMQLQQYYPMFGSEGSCSSSDGSCSYGGNKEIKKEEMMGFHHHHDEEGVIIMGCQGEEGINQWTEKLDKWLGGGNPLDYDLEVIKQLVISSNDGLFSVDENKTQEGMMMNKSIYKVL 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181548g00007 341 CDD SANT 70 111 IPR001005 -
Stsc181548g00007 341 PANTHER OS09G0431300 PROTEIN 1 266 - -
Stsc181548g00007 341 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Stsc181548g00007 341 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Stsc181548g00007 341 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Stsc181548g00007 341 FunFam Transcription factor MYB36 70 141 - -
Stsc181548g00007 341 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Stsc181548g00007 341 CDD SANT 16 62 IPR001005 -
Stsc181548g00007 341 Gene3D - 69 133 - -
Stsc181548g00007 341 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Stsc181548g00007 341 SMART sant 13 64 IPR001005 -
Stsc181548g00007 341 SMART sant 67 115 IPR001005 -
Stsc181548g00007 341 Gene3D - 7 68 - -
Stsc181548g00007 341 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Stsc181548g00007 341 FunFam Transcription factor RAX3 7 68 - -
Stsc181548g00007 341 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181548g00007 Stsc-Chr181548 47155 48776 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181548g00007 1 128 MYB Transcription Factor Family AT5G57620 82.812 2.05e-76 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc181548g00007 Myb_DNA-binding 4.4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181548g00007 K09422 - gmx:100796382 326.25