Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181546g00010 ATGGCTCACAAAAACCATGACGTTCATGACAATGATTCTTCTTCGTCTTCTAATAACACTCCTTCTACTCGTCAAGACAATAATCATAATAACGGCACTTCTTCGTTTTCCGCTTCATCTGATGATGATTCTTTATTTTCCCCTTCTGAAGTCAATGACCAAAACAACAATCACCATAAAGTTGCACCGCCTCCGAAGCCGCCAATTTCTAATGCTTCCAATCCCTCACCCAGGGAACCTACTCTCTCGCCGCCCTCTCGGAATCCTCCACCGGATCGCTCTTCACCACCATCGCCAAACGCATTTCCGCCGCCTCCACCACCTCCTCCTCCTTTAGAAGTGTCGCCTCCACCGCGGTCGTCTCCGCCAGCGGCACAGACACAAAACGGAACCTCTTCTCCTCCTCCTCCTTCTCATTTTCATTCTCCACCTCCACCAGCTCCTCCTCCTCCGTCTTCTTCAAATGAGTTGTCATCAGCATTAAGCCCCGTCCGAAGTAACTCGTCCTCTAATAACAAGCAATCATTTGAGACGGTTTCTTCTTCAGCAGCTCGGTTTGGTAATAAAGGGACAAGCAGCGATGGGGGAAAAGCTAGCATTGATATAGGAAAATATGTAGGGTATACCCTAGCTGCTGTTTTCTTCTTAGCCTTGGTTGCTTTAACTTTCATCATGTTCCGAAAGAAGAAATCAAGAGCGGACGTCGTCTATGCTACACCCTATATACCTCCCCAACATCATCTTCCCCTTCACCTTAAACCAGGTATTGATAGAATTTACTATGGACATGGTGGTGTTGGCAATGGTTCAATGTTATCTTCCAATAGAAGCAACCGTGGAAGTGCCAGAAATCTTGGAAGCATGAGAATTTTAGCATCTTCATCAGACTTAGGGCAACAGGTGAATTTTCCAGTAGCATTTAGCTACGAAGAGGTCTTGGAGGTAACCAATTCATTCTCTTATGAAAGCGTCATAGGTGAAGGAGGCTTTGGCCATGTTTACAAAGGGACACTGCCGGACGGCAAGGTAGTCGCCGTTAAGAAGCTAAAGGTTGGAAGCGTGCAGGGGGAAAGGGAATTCAGGGCTGAAGTGGAGATTATCAGCCGTGTCCATCACAGGCATTTGGTATCTTTAGTTGGTTATTGCATTTGTGAGGAGGAAAGATTGCTCATCTATGAGTATGTTCCTAATGGGACACTCCATCACCACTTGCATGGAAGTGGAATGCCAGTGCTGACATGGGACAAGAGGTGCAAGATAGCTATTGGTGCTGCAAAGGGCTTGGCATATCTGCATGAGGATTGCAGCCAAAAGATTATTCACAGAGATATTAAATCAGCAAACATACTTTTGGATGATACTTTCGAGGCTCAGGTTGCAGATTTTGGACTTGCAAGGCTAACTGATACTACTACAAGTCATGTGTCTACCAGGGTTGTGGGGACCTTTGGGTACATGGCTCCAGAGTATGCAACAAGTGGGAAATTAACTGATAGATCAGACGTTTTCTCATTTGGGGTTGTCCTCCTTGAGCTTCTAACAGGAAGGAAACCAGTTGATGACTCTCAACCTTTGGGAGATGAGAGCTTGGTTGAATGGGCTCGTCCGCATCTCCTTCATGCAATGGAGACACATGACTGTAGTGTGCTAGTAGATCCAAGACTTCAAAATCAATTTGTGGAGGCTGAAATGTTCAGAATGATTGAGGCTGCTGCGGCTTGTGTTCGCCACTCTGCTCCTAAACGGCCTCGAATGGTTCAGGTTGTAAGAGCCTTAGATAGTGGAGCCGAAATATCTGATCTATCTAATGGGGTGAAATATGGTCACAGTACTACCTATGATTCAAACCAGTATGATAGAGACATTATGATGTTCCACCAGAGAATGGCCAATGCCAGCTATGGTGGTGACTCTGATTTCTATACATACAGTAAAGAATGCAGTTCCTCAAGAGAAATGACTACTTGTGGATCCCAAAATGGATCGAGGCCAAGTAGTAGTAGTGAGTTAGAATCCATAGCACTCAACAGGCATAGTAGAACTTCTTCTTAG 2052 0.4542 MAHKNHDVHDNDSSSSSNNTPSTRQDNNHNNGTSSFSASSDDDSLFSPSEVNDQNNNHHKVAPPPKPPISNASNPSPREPTLSPPSRNPPPDRSSPPSPNAFPPPPPPPPPLEVSPPPRSSPPAAQTQNGTSSPPPPSHFHSPPPPAPPPPSSSNELSSALSPVRSNSSSNNKQSFETVSSSAARFGNKGTSSDGGKASIDIGKYVGYTLAAVFFLALVALTFIMFRKKKSRADVVYATPYIPPQHHLPLHLKPGIDRIYYGHGGVGNGSMLSSNRSNRGSARNLGSMRILASSSDLGQQVNFPVAFSYEEVLEVTNSFSYESVIGEGGFGHVYKGTLPDGKVVAVKKLKVGSVQGEREFRAEVEIISRVHHRHLVSLVGYCICEEERLLIYEYVPNGTLHHHLHGSGMPVLTWDKRCKIAIGAAKGLAYLHEDCSQKIIHRDIKSANILLDDTFEAQVADFGLARLTDTTTSHVSTRVVGTFGYMAPEYATSGKLTDRSDVFSFGVVLLELLTGRKPVDDSQPLGDESLVEWARPHLLHAMETHDCSVLVDPRLQNQFVEAEMFRMIEAAAACVRHSAPKRPRMVQVVRALDSGAEISDLSNGVKYGHSTTYDSNQYDRDIMMFHQRMANASYGGDSDFYTYSKECSSSREMTTCGSQNGSRPSSSSELESIALNRHSRTSS 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181546g00010 683 Gene3D Transferase(Phosphotransferase) domain 1 395 609 - -
Stsc181546g00010 683 FunFam proline-rich receptor-like protein kinase PERK8 395 607 - -
Stsc181546g00010 683 ProSitePatterns Protein kinases ATP-binding region signature. 325 348 IPR017441 GO:0005524
Stsc181546g00010 683 FunFam Proline-rich receptor-like protein kinase PERK8 292 394 - -
Stsc181546g00010 683 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 215 639 IPR047117 -
Stsc181546g00010 683 ProSitePatterns Serine/Threonine protein kinases active-site signature. 439 451 IPR008271 GO:0004672|GO:0006468
Stsc181546g00010 683 CDD STKc_IRAK 325 593 - -
Stsc181546g00010 683 MobiDBLite consensus disorder prediction 651 683 - -
Stsc181546g00010 683 MobiDBLite consensus disorder prediction 136 153 - -
Stsc181546g00010 683 Pfam Protein tyrosine and serine/threonine kinase 321 592 IPR001245 GO:0004672|GO:0006468
Stsc181546g00010 683 MobiDBLite consensus disorder prediction 154 195 - -
Stsc181546g00010 683 MobiDBLite consensus disorder prediction 12 59 - -
Stsc181546g00010 683 Gene3D Phosphorylase Kinase; domain 1 286 394 - -
Stsc181546g00010 683 SMART serkin_6 319 560 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181546g00010 683 PRINTS Proline rich extensin signature 68 89 - -
Stsc181546g00010 683 PRINTS Proline rich extensin signature 93 109 - -
Stsc181546g00010 683 PRINTS Proline rich extensin signature 56 68 - -
Stsc181546g00010 683 PRINTS Proline rich extensin signature 125 150 - -
Stsc181546g00010 683 ProSiteProfiles Protein kinase domain profile. 319 598 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181546g00010 683 SUPERFAMILY Protein kinase-like (PK-like) 298 592 IPR011009 -
Stsc181546g00010 683 MobiDBLite consensus disorder prediction 61 123 - -
Stsc181546g00010 683 MobiDBLite consensus disorder prediction 1 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181546g00010 Stsc-Chr181546 41284 44323 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181546g00010 206 663 Trihelix Transcription Factor Family AT1G70460 59.227 0.0 538
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Stsc181546g00010 PK_Tyr_Ser-Thr 4.6e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181546g00010 - - ahf:112791792 800.816