Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181546g00009 ATGGATAGAGCTTCCATTCTTGCAGACGCAATTGACTACATAAAGGAACTGCATGGACAAGTTGAAGATCTAAAAGATGAGCTCAGGACTTTGGAAGTAGAGGACTGCGAGAAGAACACACTGCAATCGATTATGCCAACGAGTAAAGAACAAGGAGGAACCGGAACTCTCCTTACTGAGTTCAACCAAAGTTCTTCTAATTCCACTAAACGTATTGACATGAAGATGCAAACAGAAGTGAATCAGATAAGCAGGACTGAGTTATTGATTAAGGTATGCTGTGAGCAGAAGCCAGGTGGGTTTTCAAGGTTGATGGAAGCTATAAATTCGTCTGGATTTCAGGTGGAAAATGCCAATATGATCACAATTGATGGAAAGGTTCAGATCGTTCTAACAGTTGAGGCAGCCAAGGAGGGTATTCACCCAACTAAGCTGAAGAATTTTTTGACAGAGCAAACAGTTTGA 465 0.4129 MDRASILADAIDYIKELHGQVEDLKDELRTLEVEDCEKNTLQSIMPTSKEQGGTGTLLTEFNQSSSNSTKRIDMKMQTEVNQISRTELLIKVCCEQKPGGFSRLMEAINSSGFQVENANMITIDGKVQIVLTVEAAKEGIHPTKLKNFLTEQTV 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181546g00009 154 Coils Coil 7 34 - -
Stsc181546g00009 154 Gene3D - 1 41 IPR036638 GO:0046983
Stsc181546g00009 154 ProSiteProfiles ACT domain profile. 89 154 IPR002912 -
Stsc181546g00009 154 SUPERFAMILY ACT-like 87 148 IPR045865 -
Stsc181546g00009 154 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 1 35 IPR036638 GO:0046983
Stsc181546g00009 154 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 1 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181546g00009 Stsc-Chr181546 39789 40991 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181546g00009 1 153 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G16910 37.356 8.83e-22 88.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181546g00009 - - cam:101515167 173.711