Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181544g00009 ATGGCTCTCCTTGCACTCTTGCCTGACCACTCCCTTCCCAACAACAATGCTAAAATCAATCATAAGCAGAAGCAGAACAAACAGAAACAAAAGCAGAAGCCGAAGCAGAAAGGAAAACAGAGTTCTTCTTCTTCTTCTTCTTCTTCTTCATGGGGGCAAATCAAGAACTTGATATCTTGCAAACAAGTTGAAGGGTCAAGAGTGCATGAACCTTCATCATCATCAAAGACAACGATGATGGGTTCATCTTGCAGCTCCATATGCAGCTTCAGAGATGTTGTTCATGGAAACACCAGAGTTGTTCATAGAGGTGATAACTCTTCACCTGAGAGCAGCTCACTTGGCCAAGAAACTGGTTTGTTGACTAGGAAACCTGCCGTCTCCACCCCCACCCCTGCCAAATCATCAAGAAGGTCATCATCTTCATCTGTGAAACCCAATAACAATGGTGGAACAACCTACACATGTTCTAGAGGGATGCAATTCAGGAAGCTATCTGGTTGTTATGAATGTCACATGATCATTGACCCTACCAGGCTACCAATTCCAAGGAGCAGTGTGTGTGCTTGTTCTCAGTGTGGAGAGGTGTTCCCTAAGATGGAAAGCTTAGAGCTTCATCAAGCTCTCCGTCATGCTGTTTCAGAGCTGGGTCCAGAGGATTCAGGGAGGAACATAGTGGAAATAATATTCAAATCAAGCTGGCTAAAGAAGGACAACTCCATATGCAAGATCGAACGGATACTAAAGGTCCACAATACTCAACGCACCATCCAACGCTTTGAGGACTGCAGGGACACCGTAAAGTCGCGTGCACTGAATAGTAACAAGAAAAACCCCAGGTGCGCAGCGGATGGCAATGAACTGTTGAGGTTCCATTGCACCACCTTGACCTGCGCACTTGGGGCACAAGGATCCACCTCCCTTTGCACTTCCATTCCTGGTTGTGGCGTATGCACTATCATAAGGCATGGGTTTCAAGGCAAGTCTGGTTGTGGCGGAGACGGTGGAAAGGGGGTGAAGACCACCGCAAGTAGCGGTAGGGCACATGACTCCGTGGCAGGACTTTGTGGCGGCGAAGGTAATGGTGGTAGTGGTGGCCGAAGGGCAATGTTGGTTTGTCGTGTGATTGCTGGGAGGGTGAGGCGTGTGGCAGAGGACGCGCCACCGGAGGAGGATGGTGTCTCGGCTAGTGGTGGCTATGATTCAGTTGCAGGGTGTGCCGGAATCTATTCTAGTCTTGAAGAATTGGTTGTTTTCAACCCACGGGCTATCTTACCCTGTTTTGTGGTTGTTTACAAGGTTCTTTCTTGTTGA 1314 0.4825 MALLALLPDHSLPNNNAKINHKQKQNKQKQKQKPKQKGKQSSSSSSSSSSWGQIKNLISCKQVEGSRVHEPSSSSKTTMMGSSCSSICSFRDVVHGNTRVVHRGDNSSPESSSLGQETGLLTRKPAVSTPTPAKSSRRSSSSSVKPNNNGGTTYTCSRGMQFRKLSGCYECHMIIDPTRLPIPRSSVCACSQCGEVFPKMESLELHQALRHAVSELGPEDSGRNIVEIIFKSSWLKKDNSICKIERILKVHNTQRTIQRFEDCRDTVKSRALNSNKKNPRCAADGNELLRFHCTTLTCALGAQGSTSLCTSIPGCGVCTIIRHGFQGKSGCGGDGGKGVKTTASSGRAHDSVAGLCGGEGNGGSGGRRAMLVCRVIAGRVRRVAEDAPPEEDGVSASGGYDSVAGCAGIYSSLEELVVFNPRAILPCFVVVYKVLSC 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181544g00009 437 ProSiteProfiles Zinc finger C2H2 type domain profile. 188 216 IPR013087 -
Stsc181544g00009 437 FunFam C2H2-like zinc finger protein 212 433 - -
Stsc181544g00009 437 SUPERFAMILY ADP-ribosylation 213 433 - -
Stsc181544g00009 437 MobiDBLite consensus disorder prediction 101 153 - -
Stsc181544g00009 437 MobiDBLite consensus disorder prediction 37 83 - -
Stsc181544g00009 437 MobiDBLite consensus disorder prediction 100 153 - -
Stsc181544g00009 437 Gene3D - 212 434 - -
Stsc181544g00009 437 MobiDBLite consensus disorder prediction 22 36 - -
Stsc181544g00009 437 ProSitePatterns Zinc finger C2H2 type domain signature. 188 211 IPR013087 -
Stsc181544g00009 437 MobiDBLite consensus disorder prediction 1 83 - -
Stsc181544g00009 437 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 49 432 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181544g00009 Stsc-Chr181544 40354 43984 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181544g00009 1 435 C2H2 Transcription Factor Family AT1G75710 56.962 4.70e-172 488
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc181544g00009 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181544g00009 - - gmx:100816726 567.385