Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181544g00008 ATGGCTCTCCTTGCACTCTTGCCTGACCACTCCCTTCCCAACAACAATGCTAAAATCAATCATAAGCAGAAGCAGAACAAACAGAAACAAAAGCAGAAGCCGAAGCAGAAAGGAAAACAGAGTTCTTCTTCTTCTTCTTCTTCTTCTTCATGGGGGCAAATCAAGAACTTGATATCTTGCAAACAAGTTGAAGGGTCAAGAGTGCATGAACCTTCATCATCATCAAAGACAACGATGATGGGTTCATCTTGCAGCTCCATATGCAGCTTCAGAGATGTTGTTCATGGAAACACCAGAGTTGTTCATAGAGGTGATAACTCTTCACCTGAGAGCAGCTCACTTGGCCAAGAAACTGGTTTGTTGACTAGGAAACCTGCCGTCTCCACCCCCACCCCTGCCAAATCATCAAGAAGGTCATCATCTTCATCTGTGAAACCCAATAACAATGGTGGAACAACCTACACATGTTCTAGAGGGATGCAATTCAGGAAGCTATCTGGTTGTTATGAATGTCACATGATCATTGACCCTACCAGGCTACCAATTCCAAGGAGCAGTGTGTGTGCTTGTTCTCAGTGTGGAGAGGTGTTCCCTAAGATGGAAAGCTTAGAGCTTCATCAAGCTCTCCGTCATGCTGTTTCAGAGCTGGGTCCAGAGGATTCAGGGAGGAACATAGTGGAAATAATATTCAAATCAAGCTGGCTAAAGAAGGACAACTCCATATGCAAGATCGAACGGATACTAAAGGTCCACAATACTCAACGCACCATCCAACGCTTTGAGGACTGCAGGGACACCGTAAAGTCGCGTGCACTGAATAGTAACAAGAAAAACCCCAGGTGCGCAGCGGATGGCAATGAACTGTTGAGGTTCCATTGCACCACCTTGACCTGCGCACTTGGGGCACAAGGATCCACCTCCCTTTGCACTTCCATTCCTGGTTGTGGCGTATGCACTATCATAAGCTTCAATTGA 975 0.4595 MALLALLPDHSLPNNNAKINHKQKQNKQKQKQKPKQKGKQSSSSSSSSSSWGQIKNLISCKQVEGSRVHEPSSSSKTTMMGSSCSSICSFRDVVHGNTRVVHRGDNSSPESSSLGQETGLLTRKPAVSTPTPAKSSRRSSSSSVKPNNNGGTTYTCSRGMQFRKLSGCYECHMIIDPTRLPIPRSSVCACSQCGEVFPKMESLELHQALRHAVSELGPEDSGRNIVEIIFKSSWLKKDNSICKIERILKVHNTQRTIQRFEDCRDTVKSRALNSNKKNPRCAADGNELLRFHCTTLTCALGAQGSTSLCTSIPGCGVCTIISFN 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181544g00008 324 ProSiteProfiles Zinc finger C2H2 type domain profile. 188 216 IPR013087 -
Stsc181544g00008 324 MobiDBLite consensus disorder prediction 101 153 - -
Stsc181544g00008 324 MobiDBLite consensus disorder prediction 37 83 - -
Stsc181544g00008 324 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 49 321 - -
Stsc181544g00008 324 SUPERFAMILY ADP-ribosylation 213 301 - -
Stsc181544g00008 324 MobiDBLite consensus disorder prediction 100 153 - -
Stsc181544g00008 324 MobiDBLite consensus disorder prediction 22 36 - -
Stsc181544g00008 324 ProSitePatterns Zinc finger C2H2 type domain signature. 188 211 IPR013087 -
Stsc181544g00008 324 MobiDBLite consensus disorder prediction 1 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181544g00008 Stsc-Chr181544 40354 44134 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181544g00008 1 321 C2H2 Transcription Factor Family AT1G75710 60.465 1.39e-137 396
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc181544g00008 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181544g00008 - - aprc:113874200 444.506