Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181543g00006 ATGCAAGGAACAATGGGTTCTGTGGCTACTCCATTGAGTTTTGGGAGCCTAATGGGTGTGAGTTCCAATGGGGGAAGGTCCCGTTCTATTGTGAGGAGGGTGTCCCTTTCAAGAGGTAACTCTATTAAGGATAGGAGGAGATGGCATTGTGTATCACTTTCTGTGTGTAGATATTCAGTCACCACTACCGATTTTGTAGCTGACCAAGGAAATTCAGTGTCCCTTGATTCTAACAGTAGGAGAGGAAGCCAAGATGGTGATGATGGTAGTGGTGGTTTTGTGCTTAAGCCTCCTCCTAAGCCTGTTTTGAAGTCCCCGGAGAATAAGGGTAGTCCCCCTTTGGGCTCGAATTCGGACTCATGGGGGAATTCGCGGAGTGGCGAGTCCCCTGATAATGATGTACAGGAGAGGAATAAAGTGATTGAGTCACTTGGTGAGGTGTTGGAGAAGGCTGAAAAGTTGGAAAGTCCCAAGTTGGATGATAAAAGGAATAATGGATCTGTAAATAAACCCACAGTGCCCACTACAAATGGTAATTCTAAGGTTAGTAGACCGGTGAATTCAGCTAAAACGCAGAAGGCTAAAACCTTGAAGAGTGTGTGGCGTAAGGGGGATTCGATTGCAAATGTGCAGAAGGTTGTCAAAGAGGTACCTAAGCCGAATAACAACAAGAGTGTGGTAGGGGAAGAATCAGAAATAGGGGTGGCAGAAGAGAAGGTAACTTCCGAACCTCGTGCTCCCCAGCCACCACTAAAACCTCAGCCAATGTTACAAGCAAAACCTTCTGTAGCTCCACCACCAATAAAAAAACCAGTTGTGTTGAAGGATAAGGGGGCAGCTAATGCATCTGTAAAATCTAAAGAAAAGAAGCCTGGGCCGATCTTAATCGACAAGTTTGCTTCGAAGAAACCCGTTGTTGATCCTGTAATTGCTCAAGCGGTCCTAGCCCCTCCGAAACCAGGGAAGGGCCCTCCGTCGGGAAAGTTTAAAGATGATTACAGGAAGAGAGGGGCTGCAGCTGGAGGAGCAAGAAGACGACTGTTAAATGATGATGATGATGCGATTCCCGATGAGGATACATCGGAACTCAATGTCTCCATTCCTGCAAGGCTACAGGCTGCCAAGGATGCGGCTCCTGTTAAAGTCGAAATTCTAGAGGTCAGTGACAAAGGTATGCTGGTGGAGGAGTTAGCCTTCAACTTGGCGATCAGCGAAGGAGAAATCCTTGGATCTTTGTATGCCAAGGGGATTAAACCAGACGGCGTGCAAACTCTCGACAAAGATATGGTGAAGATGATATGTAAAGAGTATGACGTGGAAGTTATAGATGCTGATCCAATCAAAGTTGAATCATTAGCAAGGAAAAGAGAAATTCTTGATGAAGATGATCTTGACAAGCTCAAAGATAGACCTCCTGTCATCACTATTATGGGCCATGTAGATCATGGCAAGACAACTCTTTTGGATTATATACGGAAGAGCAAGGTAGCTGCTTCTGAAGCCGGTGGGATCACCCAGGGAATCGGGGCTTATAAAGTTGAAGTACCTGTTGATGGGAAACCTTTGCCCTGTGTTTTCCTTGATACTCCTGGGCATGAGGCATTTGGGGCAATGAGAGCTCGTGGAGCGAGTGTAACAGACATTGCTATCATTGTTGTGGCTGCTGATGATGGCATTCGGCCTCAAACAAATGAAGCTATAGCTCATGCCAAAGCAGCAGGAGTACCCATAATCATTGCTATAAACAAGATAGATAAAGATGGAGCAAATCCTGAGCGTGTCATGCAAGAGCTTTCTTCTATTGGTTTAATGCCAGAAGACTGGGGTGGCGAAACCCCAATGGTTCAGATAAGTGCTCTTAAAGGGCAGAATGTAGATGATCTTTTGGAAACTGTTATGCTTGTGGCTGAGTTGCAAGAGCTGAAAGGAAATCCTGATAGAAGCGCAAAGGGAACAGTCATCGAGGCAGGTCTCGATAAAGCAAAAGGACCTTTTGCCACCTTTATTGTGCAAAATGGCACCCTCAGAAGGGGAGATATAGTAGTTTGCGGAGAAGCTTTTGGAAAGGTGCGAGCTTTGTTTGATGATGCTGGAAAGCGTGTTGATTTAGCTACACCCTCTATACCTGTACAGGTTATTGGATTGAATAATGTTCCAATTGCCGGCGATGAATTTGAGGTCGTCGAATCCCTTGATACTGCACGTGAAAGGGCAGAGTCCCGTGCTGAGTTATTGCGAAGTGAGCGTATTTCTGCGAAGGCAGGGGATGGCAAGATTACCCTTTCTTCCTTAGCTTCTGCAGTTTCATCAGGAAAACTTTCTGGACTCGACTTGCATCAACTAAATATTATCTTGAAGGTTGATCTTCAGGGATCCATTGAGGCCGTTAGACAAGCTCTGCAAGTGCTACCACAAGATAATGTCACGTTGAAGTTTTTGTTGGAAGCAACAGGCGACGTAACCACAAGTGACATTGATCTTGCCGTCGCAAGCAAAGCTATTATTTTTGGATTTAATGTCAAAGCACCAGGTTCGGTGAAAAGCTATGCAGATAATAAAGGTGTTGAGATTAGATTATACAGAGTCATTTACGACTTAATCGACGATGTCAGAAACGCAATGGAGGGGCTCTTAGATACTGTTGAGGAACAAATAAAAATTGGCTCAGCGGAAGTGCGAGCCACATTCAGCAGTGGTAGTGGCCGTGTTGCGGGATGCATGGTTAATGAGGGAAAAGTGGAAAAAGGTTGCGGTATTCGAGTCATTCGGAAGGGAAAAGAAGTTCATGTTGGTACCGTTGATTCTTTGAGACGTGTGAAGGAGATAGTTAAAGAGGTAAATGCTGGTCTCGAGTGTGGAATTGGTTTAGAGGACTTTGATGATTGGGAAGAGGGTGATCTTCTTGAAGCCTTCAACTCAGTTCAGAAGAGGCGGACACTTGAAGAGGCATCCGCATCCATGGCAGCTGCTGTGGAGGGAGTAGGAGTTTAA 2991 0.4544 MQGTMGSVATPLSFGSLMGVSSNGGRSRSIVRRVSLSRGNSIKDRRRWHCVSLSVCRYSVTTTDFVADQGNSVSLDSNSRRGSQDGDDGSGGFVLKPPPKPVLKSPENKGSPPLGSNSDSWGNSRSGESPDNDVQERNKVIESLGEVLEKAEKLESPKLDDKRNNGSVNKPTVPTTNGNSKVSRPVNSAKTQKAKTLKSVWRKGDSIANVQKVVKEVPKPNNNKSVVGEESEIGVAEEKVTSEPRAPQPPLKPQPMLQAKPSVAPPPIKKPVVLKDKGAANASVKSKEKKPGPILIDKFASKKPVVDPVIAQAVLAPPKPGKGPPSGKFKDDYRKRGAAAGGARRRLLNDDDDAIPDEDTSELNVSIPARLQAAKDAAPVKVEILEVSDKGMLVEELAFNLAISEGEILGSLYAKGIKPDGVQTLDKDMVKMICKEYDVEVIDADPIKVESLARKREILDEDDLDKLKDRPPVITIMGHVDHGKTTLLDYIRKSKVAASEAGGITQGIGAYKVEVPVDGKPLPCVFLDTPGHEAFGAMRARGASVTDIAIIVVAADDGIRPQTNEAIAHAKAAGVPIIIAINKIDKDGANPERVMQELSSIGLMPEDWGGETPMVQISALKGQNVDDLLETVMLVAELQELKGNPDRSAKGTVIEAGLDKAKGPFATFIVQNGTLRRGDIVVCGEAFGKVRALFDDAGKRVDLATPSIPVQVIGLNNVPIAGDEFEVVESLDTARERAESRAELLRSERISAKAGDGKITLSSLASAVSSGKLSGLDLHQLNIILKVDLQGSIEAVRQALQVLPQDNVTLKFLLEATGDVTTSDIDLAVASKAIIFGFNVKAPGSVKSYADNKGVEIRLYRVIYDLIDDVRNAMEGLLDTVEEQIKIGSAEVRATFSSGSGRVAGCMVNEGKVEKGCGIRVIRKGKEVHVGTVDSLRRVKEIVKEVNAGLECGIGLEDFDDWEEGDLLEAFNSVQKRRTLEEASASMAAAVEGVGV 996
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181543g00006 996 Gene3D - 777 881 IPR036925 -
Stsc181543g00006 996 MobiDBLite consensus disorder prediction 166 195 - -
Stsc181543g00006 996 Pfam Translation-initiation factor 2 777 870 IPR023115 -
Stsc181543g00006 996 MobiDBLite consensus disorder prediction 340 361 - -
Stsc181543g00006 996 MobiDBLite consensus disorder prediction 110 129 - -
Stsc181543g00006 996 MobiDBLite consensus disorder prediction 130 165 - -
Stsc181543g00006 996 PRINTS GTP-binding elongation factor signature 577 586 IPR000795 GO:0003924|GO:0005525
Stsc181543g00006 996 PRINTS GTP-binding elongation factor signature 525 535 IPR000795 GO:0003924|GO:0005525
Stsc181543g00006 996 PRINTS GTP-binding elongation factor signature 473 486 IPR000795 GO:0003924|GO:0005525
Stsc181543g00006 996 PRINTS GTP-binding elongation factor signature 541 552 IPR000795 GO:0003924|GO:0005525
Stsc181543g00006 996 SUPERFAMILY Translation proteins 884 978 IPR009000 -
Stsc181543g00006 996 CDD IF2_eIF5B 472 638 - -
Stsc181543g00006 996 Hamap Translation initiation factor IF-2 [infB]. 2 978 IPR000178 GO:0003743|GO:0003924|GO:0005525|GO:0006413
Stsc181543g00006 996 FunFam Translation initiation factor IF-2 466 644 - -
Stsc181543g00006 996 SUPERFAMILY Translation proteins 645 729 IPR009000 -
Stsc181543g00006 996 FunFam Translation initiation factor IF-2 645 763 - -
Stsc181543g00006 996 Gene3D - 466 644 IPR027417 -
Stsc181543g00006 996 FunFam Translation initiation factor IF-2 777 881 - -
Stsc181543g00006 996 Gene3D Translation factors 645 760 - -
Stsc181543g00006 996 PANTHER TRANSLATION INITIATION FACTOR IF-2-RELATED 186 985 IPR015760 -
Stsc181543g00006 996 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 469 642 IPR000795 GO:0003924|GO:0005525
Stsc181543g00006 996 SUPERFAMILY Initiation factor IF2/eIF5b, domain 3 776 888 IPR036925 -
Stsc181543g00006 996 ProSitePatterns Initiation factor 2 signature. 931 953 IPR000178 GO:0003743|GO:0003924|GO:0005525|GO:0006413
Stsc181543g00006 996 Pfam Elongation factor Tu GTP binding domain 474 634 IPR000795 GO:0003924|GO:0005525
Stsc181543g00006 996 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 463 642 IPR027417 -
Stsc181543g00006 996 Coils Coil 728 748 - -
Stsc181543g00006 996 MobiDBLite consensus disorder prediction 246 268 - -
Stsc181543g00006 996 Gene3D Translation factors 882 979 - -
Stsc181543g00006 996 MobiDBLite consensus disorder prediction 212 295 - -
Stsc181543g00006 996 NCBIfam translation initiation factor IF-2 390 980 IPR000178 GO:0003743|GO:0003924|GO:0005525|GO:0006413
Stsc181543g00006 996 CDD IF2_mtIF2_II 649 743 IPR044145 -
Stsc181543g00006 996 MobiDBLite consensus disorder prediction 69 200 - -
Stsc181543g00006 996 FunFam Translation initiation factor IF-2 882 979 - -
Stsc181543g00006 996 CDD mtIF2_IVc 888 970 - -
Stsc181543g00006 996 NCBIfam small GTP-binding protein domain 471 632 IPR005225 GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181543g00006 Stsc-Chr181543 24984 32043 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181543g00006 470 868 Eukaryotic Initiation Factors Gene Family AT1G76810 30.108 1.46e-28 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181543g00006 K02519 - gmx:100778924 1410.59