Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181543g00004 ATGGAGAACCATCAATGGCGTCTCTATGAACATGACCCACTTCTTCTAACCGACGTTTCTTTCCAACAAGAAACTGAACCCTCTTCCACTCACTGCTCCAACTACGTTGATTCAAACGCATCGCTGAGCTCTGGTTGTTCAGCCATGGCTGCTGATCCCGAATCTTGTGGTGGAAGCCCAAGCTATGGTGTAGGATTCCAAGGGAAAAGTGGATGCTTTGAGAAGAATAGTGTGGAATTTGATGATCCTGTTGTGAGAACTGTTCTTGATGGTAGATCAATGTTGGGGTATTCTCTGACTTCACCAGATATGGTGATCTGTGCTGGATCACCAGATATTGCTGGAATAAGCTATGGTGATTCCCCAGAGGTGTTTCATAACAAGAATTGCAAGAATTTGGAGTCATCCATGGAGCTTTCCCTAGAGAATGGAATCAATGGCTCTGAAGTTGACAATGGCCATAAGACCCCTACTGTTAAATTCTCTAACTTGTGTCAAACTTTTACACATGATGCTTCCTTCGAGCTTCTTCCGCCGCCTTTAGCCACGGTCGAGTCACCCCTAGACTACCCTCCAAGAGAAAATGAAATTCTAGAAGATATTTGTGTGTCTCAGGAAGCTGAATTGGAATACTCAGAAGATACTGAGAACATTGGAGTGGAAGAGAAGTATGAGAAGCTGAAAAAGGCGCTGGCGGAAACAAGGAGGGAGTTGAAAATGAGTAGGAGGGAGAATGAACAGAAGAGCAAGGAATGCCAAGAAGCTTGGAACTCCTTGAAAGAGCTACAGAATGAGCTCATGCGCAAGTCGATGCACGTAGGATCATTGGCTTTTGCCATAGAGGGGCAAGTGAAAGAGAAAAGCAAGTGGTTTTCATCATTGAGAGACTTGATGAGGAAATTAAAGATCATGAAAATGGAGCACATCAAGCTCTTAGAGGAAGCAGAGGCATACAGGAAATGTCAAGCAGAAATGAGCAAAATCGGGTCAATCATAAATGCCAAAATAAATGAGCAACAAGAATCTCATGAAGATCTCAAGTTCAAATATATCGAGGGGGAAAAGGAACGAAAAGAGCTTTACAACAAGGTTTTGGAATTGAGAGGAAACATACGCGTCTTTTGCAGGTGTAGGCCCCTCAATGCTGAAGAGTTAGCAGCAGGAGCCACAATGGCCGTAGATTTTGAATCTGCGAAAGATGGTGAGCTAACTGTAATGTCAAATGGTGCTCCTAGAAAGATTTTCAAGTTTGATGCTGTCTTTGGCCCCCAAGCTCAACAAGCCGATATCTTCGAAGACACGGCACCATTTGCAACCTCAGTTCTAGACGGGTACAATGTTTGCATTTTTGCATATGGGCAGACTGGAACCGGGAAAACCTTCACAATGGAGGGCATGGAAGAGGCTCGCGGAGTTAATTTCAGGACTCTTGAGAAAATGTTTGACATAATCAGGGAGAGACAGACACTCTACCGTTACGATGTGTCTGTGAGTGTTTTAGAAGTGTACAATGAGCAAATAAGAGATTTGCTGTTTTCGGGAAATCAGCCAGGAACAACTGCAAGAAGGTAG 1572 0.4389 MENHQWRLYEHDPLLLTDVSFQQETEPSSTHCSNYVDSNASLSSGCSAMAADPESCGGSPSYGVGFQGKSGCFEKNSVEFDDPVVRTVLDGRSMLGYSLTSPDMVICAGSPDIAGISYGDSPEVFHNKNCKNLESSMELSLENGINGSEVDNGHKTPTVKFSNLCQTFTHDASFELLPPPLATVESPLDYPPRENEILEDICVSQEAELEYSEDTENIGVEEKYEKLKKALAETRRELKMSRRENEQKSKECQEAWNSLKELQNELMRKSMHVGSLAFAIEGQVKEKSKWFSSLRDLMRKLKIMKMEHIKLLEEAEAYRKCQAEMSKIGSIINAKINEQQESHEDLKFKYIEGEKERKELYNKVLELRGNIRVFCRCRPLNAEELAAGATMAVDFESAKDGELTVMSNGAPRKIFKFDAVFGPQAQQADIFEDTAPFATSVLDGYNVCIFAYGQTGTGKTFTMEGMEEARGVNFRTLEKMFDIIRERQTLYRYDVSVSVLEVYNEQIRDLLFSGNQPGTTARR 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181543g00004 523 Coils Coil 217 265 - -
Stsc181543g00004 523 Coils Coil 294 314 - -
Stsc181543g00004 523 PANTHER KINESIN-LIKE PROTEIN KLP-3 192 515 IPR027640 GO:0003777|GO:0007018
Stsc181543g00004 523 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 335 516 IPR027417 -
Stsc181543g00004 523 Gene3D Kinesin motor domain 313 522 IPR036961 -
Stsc181543g00004 523 ProSiteProfiles Kinesin motor domain profile. 370 523 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Stsc181543g00004 523 SMART kinesin_4 368 521 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Stsc181543g00004 523 Pfam Microtubule binding 352 511 IPR031852 GO:0008017
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181543g00004 Stsc-Chr181543 10177 12871 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181543g00004 312 512 Calmodulin-binding Proteins AT5G65930 34.975 6.40e-30 123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181543g00004 K10406 - gmx:100817247 770