Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181538g00004 ATGGAGTTTGACCTTGAAAACCCTCTAGAGAACTCTCATCATGGTCTTCTTCAATGGCATGATCATGTTGCTTCCCTATTCCTCATTGAATCTCAACACACTCCATCTCACACTTACTTTCAGTCTCTCAACAAAGCTGCAAACTTTAACATCTCTGTTAGAACAGAACTCATTTTTCTAATCTCAAAGTTTTCTTGCAGCTTGGATCCACTTGTGTCTTACCTTTCAATCAACTATCTAGACCGGTTCTTGTCCAACCATTGGATACTGCTGAAACAACAAAAGGAATGGGCCCTTAGGTTGCTTGCAATTTCCTGTATTTCTTTAGCATCCAAGATGATAAAGTCAGGGTACTCTGCCATTGATATTCAGGCACTTGTGATGAATGATGGTGGCATCATTTTTGAGACACAAACAATTCAAAGAATGGAAGGAGTCATCTTGGGAGCATTGGAATGGAGAATGCGGTCCATCACCCCTTTCTCATTCTTAACTTTCTTCATCACTTTAATATGTGTCAAGGACCCAATGGAACAGGTTCTCAAGAAGAGAGTGGCTCAAATTCTATTCAACTCACAAGGAGAGATAAAGCTTTTGCAATTCAAGCCATCTATCATTGCTGCATCAGCACTTCTATATGCTTCTCATGAGCTTTTTCCTTTTCAATTCCAAACCTTCTCAGCAGCAATATCCAGTTGTTCATATGTAAATAAAGAGATGATGGTGAAATGCTATAATGTGATACAAGAAGTGGTAGGAATGGAGATGGAAGAGGAGGAGTGTGTGATCAACGAAGTTTCAAGTTCAGGAACACCAGTAAATGTGTTAGACTTAGACCACAATTATTCTCTGAGCTCAGAAAGTGAAAAAACCAATAATAATAATAATAATAATAATAATAATGGAGGAATCACCATAGTAGGTGATAATGGTAATGATGAAGAAGAAGAAGCAGCCTTACAAGAGAAGAAGGATTTCATCATCAACAAGAGAAGGAAGATCAACAATAATAACAATCAAACGGTCCATGTTTCTCGGATTGCACAATATTGA 1053 0.3799 MEFDLENPLENSHHGLLQWHDHVASLFLIESQHTPSHTYFQSLNKAANFNISVRTELIFLISKFSCSLDPLVSYLSINYLDRFLSNHWILLKQQKEWALRLLAISCISLASKMIKSGYSAIDIQALVMNDGGIIFETQTIQRMEGVILGALEWRMRSITPFSFLTFFITLICVKDPMEQVLKKRVAQILFNSQGEIKLLQFKPSIIAASALLYASHELFPFQFQTFSAAISSCSYVNKEMMVKCYNVIQEVVGMEMEEEECVINEVSSSGTPVNVLDLDHNYSLSSESEKTNNNNNNNNNNGGITIVGDNGNDEEEEAALQEKKDFIINKRRKINNNNNQTVHVSRIAQY 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181538g00004 350 SMART cyclin_7 55 149 IPR013763 -
Stsc181538g00004 350 MobiDBLite consensus disorder prediction 285 318 - -
Stsc181538g00004 350 FunFam D6-type cyclin 154 246 - -
Stsc181538g00004 350 Pfam Cyclin, C-terminal domain 158 257 IPR004367 -
Stsc181538g00004 350 SMART Cyclin_C_2 158 275 IPR004367 -
Stsc181538g00004 350 FunFam D6-type cyclin 36 153 - -
Stsc181538g00004 350 SUPERFAMILY Cyclin-like 140 250 IPR036915 -
Stsc181538g00004 350 Pfam Cyclin, N-terminal domain 29 155 IPR006671 -
Stsc181538g00004 350 PANTHER CYCLINS 33 252 IPR039361 -
Stsc181538g00004 350 Gene3D - 25 246 - -
Stsc181538g00004 350 MobiDBLite consensus disorder prediction 285 307 - -
Stsc181538g00004 350 Gene3D - 36 156 - -
Stsc181538g00004 350 SUPERFAMILY Cyclin-like 18 155 IPR036915 -
Stsc181538g00004 350 CDD CYCLIN_AtCycD-like_rpt2 158 248 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181538g00004 Stsc-Chr181538 21277 23353 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181538g00004 1 291 Core Cell Cycle Gene Families AT4G03270 44.850 1.70e-68 215
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181538g00004 K18812 - gmx:100820404 315.849