Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181534g00005 ATGAAGGAAAAAGTGGAATCACCAGTTACAGTTCTTGAGGACTATTTCAGGTCCTCAGATTCATCATCAGAAACAAGTAGTTCTTCAAAAGATCATCATAGTGGTTTGGATTCTGAGTATAGTGAAATTTCAAGACCAAGTTGTTCTTCAAGATGGCATTCATTTCTCCAAGTTTTGAAGGGAAAATCATCAAAGAACAATGCATTTTTGCACCCTTTGAACATATCAAGGAGAATGAGTAGTAGCATGAGAGAGTCTCTATGGCCAAGTTGCCTCTTAGATGTTGCAAGCCCTTCACCTTGTAGGTCACCATGGAAGATCTTCTCTCACCATGATATTCAACTAGCAACCAATCATTTCAGCCAAGAAAACTTGATTGGAAAGGGTGGTTATGCAGAGGTTTACAAAGGGTGTTTACCAAATAATCAACTTGTAGCAATTAAGAGGCTAACAAGAGGAAGTGCTGATGAGATCATAGGTGATTTTCTATCAGAACTTGGAGTTATGGCACATGTGAATCACCCCAACACTGCTAAGCTTGTTGGCTATGGTGTGGATGGTGGAATGTACCTTGTTCTTCAATTGTCTCAGAAAGGAAGCTTAGCTTCAGTGCTTTATGGTTCAAAGGAGAAATTACCATGGTGTATTAGGCAAAAAATTGCAGTGGGAACAGCAAAGGGTATACTATATCTTCATGAGGGTTGTCAAAGAAGAATAATCCATAGAGATATAAAAGCTGCAAATATATTACTCACTGAAGATTATGAGCCTCAGATATGTGATTTTGGGCTTGCAAAATGGCTACCAGAGAATTGGACTCACCACACTGTTTCAAAATTTGAAGGAACTTTTGGGTACCTTGCACCAGAGTACTTGCTTCATGGCATTGTTGATGAGAAAACAGATGTATTTGCCTTTGGTGTTCTTCTTTTAGAATTGGTCAGTGGAAGGCGTGCCCTTGATTATTCACAACAAAGCCTTGTTTTGTGGGCAAAACCGTTGCTAAAAAAGAATGAAATCAAGGAGCTGATTGATCCTTCACTAGATGAAGAATTTGACACAAGGCAGATGAATCTTATGTTATTAGCAGCTTCTTTGTGCATACAACAATCTTCGATCCGTCGCCCTTCTATGAGACAGGTTGTTCAACTTTTAAATGGCAATCTCACCTGTTTTAAGGGCGTGAAGAAAACTAGATTTCCCCTCTTCAGAAAAGTCTTCCAAGAAGATCTCCTTGACTCTGAATAA 1248 0.391 MKEKVESPVTVLEDYFRSSDSSSETSSSSKDHHSGLDSEYSEISRPSCSSRWHSFLQVLKGKSSKNNAFLHPLNISRRMSSSMRESLWPSCLLDVASPSPCRSPWKIFSHHDIQLATNHFSQENLIGKGGYAEVYKGCLPNNQLVAIKRLTRGSADEIIGDFLSELGVMAHVNHPNTAKLVGYGVDGGMYLVLQLSQKGSLASVLYGSKEKLPWCIRQKIAVGTAKGILYLHEGCQRRIIHRDIKAANILLTEDYEPQICDFGLAKWLPENWTHHTVSKFEGTFGYLAPEYLLHGIVDEKTDVFAFGVLLLELVSGRRALDYSQQSLVLWAKPLLKKNEIKELIDPSLDEEFDTRQMNLMLLAASLCIQQSSIRRPSMRQVVQLLNGNLTCFKGVKKTRFPLFRKVFQEDLLDSE 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181534g00005 415 SMART serkin_6 120 392 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181534g00005 415 ProSiteProfiles Protein kinase domain profile. 120 373 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181534g00005 415 SUPERFAMILY Protein kinase-like (PK-like) 105 399 IPR011009 -
Stsc181534g00005 415 MobiDBLite consensus disorder prediction 16 44 - -
Stsc181534g00005 415 PANTHER OS08G0249100 PROTEIN 6 394 IPR046958 -
Stsc181534g00005 415 Gene3D Phosphorylase Kinase; domain 1 96 194 - -
Stsc181534g00005 415 ProSitePatterns Protein kinases ATP-binding region signature. 126 148 IPR017441 GO:0005524
Stsc181534g00005 415 ProSitePatterns Serine/Threonine protein kinases active-site signature. 239 251 IPR008271 GO:0004672|GO:0006468
Stsc181534g00005 415 Gene3D Transferase(Phosphotransferase) domain 1 197 396 - -
Stsc181534g00005 415 FunFam receptor-like cytosolic serine/threonine-protein kinase RBK2 197 399 - -
Stsc181534g00005 415 Pfam Protein kinase domain 121 383 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181534g00005 415 FunFam Receptor-like cytosolic serine/threonine-protein kinase RBK2 92 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181534g00005 Stsc-Chr181534 47784 51270 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181534g00005 107 381 Trihelix Transcription Factor Family AT1G68690 41.958 1.90e-67 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Stsc181534g00005 Pkinase 9.9e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181534g00005 - - gmx:100780587 669.463