Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181531g00007 ATGGGTAAGGAGAAGAGCCACATCAACATCGTTGTTATCGGCCATGTCGACTCCGGCAAGTCGACCACCACTGGCCACCTCATCTACAAGCTTGGAGGGATCGACAAGCGTGTGATCGAGAGGTTCGAGAAGGAGGCTGCTGAGATGAACAAGCGTTCATTCAAGTATGCCTGGGTTCTCGACAAGCTCAAGGCAGAGCGTGAGCGTGGTATCACCATTGACATCGCTCTTTGGAAGTTTGAGACCACCAAGTACTACTGCACTGTGATTGATGCACCTGGTCACCGTGATTTCATCAAGAACATGATCACTGGTACCAGCCAGGCTGACTGTGCTGTTCTCATCATTGATTCCACCACCGGTGGCTTTGAGGCTGGTATCTCCAAGGATGGCCAGACCCGTGAGCATGCTCTGCTTGCCTTCACCCTTGGTGTTAGGCAGATGATCTGCTGTTGCAACAAGATGGATGCAACCACCCCAAAATACTCTAAGGCTAGGTATGATGAGATTGTGAAGGAGGTTTCATCCTATTTGAAGAAGGTCGGTTACAATCCTGATAAGATCCCATTTGTCCCAATTTCTGGTTTTGAGGGAGACAACATGATTGAGAGGTCAACCAACCTTGATTGGTACAAGGGACCCACCCTGCTTGAGGCTCTGGACCAGGTCACTGAGCCAAAGAGACCCTCTGACAAGCCTCTCAGGTTGCCACTTCAGGACGTCTACAAGATTGGTGGTATTGGAACTGTTCCTGTCGGTCGGGTCGAGACTGGTGTCCTCAAGCCTGGTATGGTGGTGACCTTTGCCCCCACTGGACTCCAGACTGAGGTTAAGTCTGTGGAGATGCACCATGAGTCGCTCCCTGAGGCTCTTCCTGGTGACAATGTTGGTTTCAATGTGAAGAATGTCTCTGTGAAGGAGTTGAAGCGTGGGTTTGTTGCTTCTAACTCAAAGGATGACCCTGCAAAGGAGGCTGCAAGCTTCACCTCTCAGGTCATCATAATGAACCACCCTGGCCAGATTGGCCAAGGTTATGCTCCAGTCCTTGACTGCCATACTTCACACATTGCTGTCAAGTTTGCTGAGCTCCAGACCAAGATTGATAGGCGTTCCGGAAAAGAGCTTGAAAAGGAGCCCAAGTTTCTTAAAAATGGTGATGCTGGTATGGTGAAGATGATTCCTACAAAGCCAATGGTTGTTGAGACTTTTGCTGAGTACCCCCCACTTGGAAGGTTTGCTGTGAGGGACATGCGTCAAACTGTGGCTGTTGGTGTCATCAAGAGCGTTGAGAAGAAGGATGCTTCTTCTGGCAAGATCACTAAAGCTGCTGCAAAGAAAACTGGCAAATGA 1350 0.4963 MGKEKSHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVRQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQVTEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPTGLQTEVKSVEMHHESLPEALPGDNVGFNVKNVSVKELKRGFVASNSKDDPAKEAASFTSQVIIMNHPGQIGQGYAPVLDCHTSHIAVKFAELQTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFAEYPPLGRFAVRDMRQTVAVGVIKSVEKKDASSGKITKAAAKKTGK 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181531g00007 449 Pfam Elongation factor Tu GTP binding domain 5 224 IPR000795 GO:0003924|GO:0005525
Stsc181531g00007 449 FunFam Elongation factor 1-alpha 1 226 - -
Stsc181531g00007 449 PANTHER TRANSLATION FACTOR 4 433 - -
Stsc181531g00007 449 FunFam Elongation factor 1-alpha 229 316 - -
Stsc181531g00007 449 SUPERFAMILY Translation proteins 231 321 IPR009000 -
Stsc181531g00007 449 Pfam Elongation factor Tu C-terminal domain 321 429 IPR004160 -
Stsc181531g00007 449 CDD EF1_alpha_II 230 320 - -
Stsc181531g00007 449 Gene3D - 1 228 IPR027417 -
Stsc181531g00007 449 Coils Coil 449 449 - -
Stsc181531g00007 449 Gene3D Translation factors 323 430 - -
Stsc181531g00007 449 NCBIfam translation elongation factor EF-1 subunit alpha 1 433 IPR004539 GO:0003746|GO:0005525|GO:0006414
Stsc181531g00007 449 PRINTS GTP-binding elongation factor signature 148 157 IPR000795 GO:0003924|GO:0005525
Stsc181531g00007 449 PRINTS GTP-binding elongation factor signature 88 98 IPR000795 GO:0003924|GO:0005525
Stsc181531g00007 449 PRINTS GTP-binding elongation factor signature 104 115 IPR000795 GO:0003924|GO:0005525
Stsc181531g00007 449 PRINTS GTP-binding elongation factor signature 9 22 IPR000795 GO:0003924|GO:0005525
Stsc181531g00007 449 PRINTS GTP-binding elongation factor signature 68 76 IPR000795 GO:0003924|GO:0005525
Stsc181531g00007 449 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 249 IPR027417 -
Stsc181531g00007 449 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 326 429 IPR009001 -
Stsc181531g00007 449 CDD EF1_alpha 9 227 - -
Stsc181531g00007 449 FunFam Elongation factor 1-alpha 323 430 - -
Stsc181531g00007 449 CDD EF1_alpha_III 323 426 - -
Stsc181531g00007 449 Hamap Elongation factor Tu [tuf]. 2 432 IPR004539 GO:0003746|GO:0005525|GO:0006414
Stsc181531g00007 449 Pfam Elongation factor Tu domain 2 248 313 IPR004161 GO:0005525
Stsc181531g00007 449 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 61 76 IPR031157 -
Stsc181531g00007 449 Gene3D Translation factors 229 316 - -
Stsc181531g00007 449 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 5 230 IPR000795 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181531g00007 Stsc-Chr181531 37541 39852 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181531g00007 1 440 Eukaryotic Initiation Factors Gene Family AT5G60390 93.864 0.0 865
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181531g00007 K03231 - thj:104810843 849.351