Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181531g00005 ATGGAAATTGATCTGAACCATGCAGTGACTGAGGTTGAAAAGAATGCAACTTGCAATGGGGGATGTCACAAAGAACAAGCTACTGCTTCTTGTGTGTGTTGTGTGCCAGCAGCAGCACCACCACAACCATCACCATCATCATCCTCTGCTGTGTCTTCTTCATCATATCTGGAGTTATGGCATGCTTGTGCTGGCCCTCTTACTTCTCTCCCAAAGAAAGGGAATGTGGTTGTCTACTTCCCACAAGGCCACTTAGAGCAAGCTGCATCTTTCTCTCCCTTCACACCATTGGAGATTCCAACACATGATCTTCAACCACAGATCTTCTGTAGAGTTGTCAATGTCCAACTACTTGCCAATAAGGAGAATGATGAGGTTTACACACAGGTCACTTTGCTTCCCCAAGCTGAGTTGGCAGGGATGGGGAAAGAGCTTCTTGAAGAGTTGGGAGGTGATGAGGAAGGAAATGGAAGAACACCTACAAAGACAACACCTCACATGTTCTGCAAGACACTCACAGCCTCTGATACAAGCACTCATGGCGGTTTTTCTGTTCCTCGTAGAGCTGCTGAAGATTGTTTTCCTCCTTTGGATTATAAGCAGCAGAGACCATCTCAAGAGCTTATTGCAAAAGACCTGCATGGTGTGGAGTGGAAATTTCGCCATATTTACAGAGGTCAGCCAAGAAGGCATCTACTCACTACCGGATGGAGTACTTTTGTTAGCCAAAAGAATCTTGTGTCTGGTGATGCTGTGCTTTTCCTAAGGGGTGAAAATGGAGAACTGAGATTGGGAATCAGAAGAGCTGTTCGACCAAGAAACGGTCTTCCTGAGTCTATTGTTGGTAACAAGAGTTGTTACCCCAATTTCCTTTCTTCTGTGGCTAATGCTATATCTGCTAAAAGCATGTTTCATGTTTTCTACAGTCCAAGGGCAAGTCATGCAGATTTTGTTGTATCCTATCAAAAGTATGCCAAAAGCATCAAGAATCCAGTGACCATTGGCACAAGATTCAAAATGAAATTTGAAATGGATGAATCACCTGAAAGAAGGTGTACTAGCGGTATAGTGACCGGAATGAGTGATTTGGATCCGTGTAGATGGCCTAAATCAAAATGGAGGTGCTTGATGGTCAGATGGGATGAGGATATCCAGACTAATAATCAGGATCGAGTATCTCCATGGGAGATCGATCCTTCATCTTCTCTCCCTCCATTGAGCATGCAGTGTTCCCCAAGGCTGAAGAAACTGCGGACAGGTCTGCAGGCTGCATCATCCAGTCACCTCATCACTGGAGGCACTGGGTTTATGGACTTGGAGGAGTCTGCGGGTTTTGAGATCAGTTCTCCCATTCATCCGAATCTTGCATCGGCCGGAGCAAGAAAGATGACTGCTGCTGATCTTATGAGGGTTCACCCTCCTAGTTATGCAGGCTTCGCGGAACCTAATAATAGGTTTCCAAGGGTCTTGCAAGGTCAAGAAATATGTCCACTAAGGTCCCTGACAGGAAAGGTTGATATGAACCTCAGTGCTTGGGGTAAACCAAGTAGTGCAAGTTGCACAACTTTCAACCTGCATCAAGCTACCAGACCAAAATTTGACACTTTGGGATCAGAAGTCCTTCAAACTGCATATTTTCCTTATGGTGATATTCACAAAGCTGGTCATGGTAGCAGCATGTTATGCACTAAACCGTCAAGTTTCCAAAGAGATAGTGCCCCTTTTAACACTCCTCTGACTCAGGCAGGGATCATTAGAAATGAGATTGGAAGGTCTGGCTCCTCAATCATGCATGAGCAGAAGCTTCCGGAGAGCGTTTCCATGGTTGCTTCTTTAGGGGCAAACAGCATGAGGATGCCAGTTCCTGATGAAGACAATCTGAAGGGGAAGATAAATGGATGTAAACTATTTGGAGTTGCCTTGTCTGGAGAAACCACTACCCAAAATATACAGAACTGTGCTAAAAGGAGCTGCACAAAGGTTCACAAGCAAGGCAGCTTAGTTGGAAGAGCCATTGATCTCTCAAGATTGAGCAGCTACACTGACCTCTTGACTGAACTTGAGAGACTGTTTGGCATGGAAGGCCTACTAAGAGATCCTGTTAAGGGATGGAGGATCCTGTACACCGACAGCGAAAATGACATCATGGTTGTCGGGGATGACCCATGGCATGAGTTCTGTGATGTGGTATCAAAGATTCACATATATACACAAGAGGAAGTGGAGAAGATGACAATTGGAATTACCAGTGATGATACACAGAGCTGTTTGGAACAGGCACCAGTAAATATGGAGGCTTCTAAGTCTTCCTCGGTGGGTCAGCCAGATTCTTCCCCAACAGTAGTTAGAGTCTAG 2355 0.4522 MEIDLNHAVTEVEKNATCNGGCHKEQATASCVCCVPAAAPPQPSPSSSSAVSSSSYLELWHACAGPLTSLPKKGNVVVYFPQGHLEQAASFSPFTPLEIPTHDLQPQIFCRVVNVQLLANKENDEVYTQVTLLPQAELAGMGKELLEELGGDEEGNGRTPTKTTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYKQQRPSQELIAKDLHGVEWKFRHIYRGQPRRHLLTTGWSTFVSQKNLVSGDAVLFLRGENGELRLGIRRAVRPRNGLPESIVGNKSCYPNFLSSVANAISAKSMFHVFYSPRASHADFVVSYQKYAKSIKNPVTIGTRFKMKFEMDESPERRCTSGIVTGMSDLDPCRWPKSKWRCLMVRWDEDIQTNNQDRVSPWEIDPSSSLPPLSMQCSPRLKKLRTGLQAASSSHLITGGTGFMDLEESAGFEISSPIHPNLASAGARKMTAADLMRVHPPSYAGFAEPNNRFPRVLQGQEICPLRSLTGKVDMNLSAWGKPSSASCTTFNLHQATRPKFDTLGSEVLQTAYFPYGDIHKAGHGSSMLCTKPSSFQRDSAPFNTPLTQAGIIRNEIGRSGSSIMHEQKLPESVSMVASLGANSMRMPVPDEDNLKGKINGCKLFGVALSGETTTQNIQNCAKRSCTKVHKQGSLVGRAIDLSRLSSYTDLLTELERLFGMEGLLRDPVKGWRILYTDSENDIMVVGDDPWHEFCDVVSKIHIYTQEEVEKMTIGITSDDTQSCLEQAPVNMEASKSSSVGQPDSSPTVVRV 784
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181531g00005 784 SUPERFAMILY CAD & PB1 domains 659 735 - -
Stsc181531g00005 784 ProSiteProfiles PB1 domain profile. 656 740 IPR000270 GO:0005515
Stsc181531g00005 784 CDD B3_DNA 166 268 IPR003340 GO:0003677
Stsc181531g00005 784 FunFam Auxin response factor 331 404 - -
Stsc181531g00005 784 ProSiteProfiles B3 DNA-binding domain profile. 168 270 IPR003340 GO:0003677
Stsc181531g00005 784 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 55 745 IPR044835 GO:0003677|GO:0006355|GO:0009725
Stsc181531g00005 784 FunFam Auxin response factor 166 270 - -
Stsc181531g00005 784 SUPERFAMILY DNA-binding pseudobarrel domain 160 278 IPR015300 -
Stsc181531g00005 784 MobiDBLite consensus disorder prediction 763 784 - -
Stsc181531g00005 784 Gene3D - 652 745 - -
Stsc181531g00005 784 Pfam Auxin response factor 294 376 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Stsc181531g00005 784 Gene3D - 166 270 IPR015300 -
Stsc181531g00005 784 Gene3D - 332 404 - -
Stsc181531g00005 784 Pfam B3 DNA binding domain 168 269 IPR003340 GO:0003677
Stsc181531g00005 784 SMART B3_2 168 270 IPR003340 GO:0003677
Stsc181531g00005 784 FunFam Auxin response factor 651 745 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181531g00005 Stsc-Chr181531 23344 27000 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181531g00005 52 784 B3 DNA Binding Superfamily AT5G60450 58.724 0.0 813
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Stsc181531g00005 B3 3.3e-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181531g00005 - - ahf:112706773 1416.75