Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181531g00001 ATGGAAGAAGGAGGAGGAGATCAACAACATGCCTCTAACAACATCTATACTTTTCCACCAGGTTTCAGATTCCACCCTTCTGATGAGGAACTCATAGTTCATTACCTACAAAACAGAATCAGCTCTCGACCACTTCCAGCTTCTATTATAGCTGAAATTGATCTTTATAAGTACAATCCCTGGGATTTGCCAAAGAAGGCTTTGTTTGGAGAGGAAGAATGGTACTTCTTTAGCCCGAGAGACCGCAAGTATCCGAACGGATTGAGGCCAAACAGGGCAGCCGGTTCAGGGTACTGGAAGGCTACTGGAACTGACAAGCCAATTCTCACTTCTTATGGATCAAAGCGCATTGGAGTGAAGAAAGCTCTTGTCTTCTATTTAGGTAGACCTCCAAAGGGGACGAAAACTGATTGGATCATGAATGAGTATAGATTGGTTGACACAATCACCAGCCCCTCCAGGCTCAAAGGTTCCATGCGTTTAGATGACTGGGTACTGTGTCGCGTTCGACACAAAGGCTACTCGTCGAAGAACTCGTGTGAGAATCAAGATAATCCTTGTGAACCAAACATGCTACCAAATCTGCCAAGAGGTGATGAAGGTTATCCAACAACAAACATGAACTTTCAGGTTGATATGATCACTGATTATCAATACAAAGACTATCAGATCCTAGCTTCTATTCTTGTTGGTGGCCATGTTCCTACCACTGAGAGCTTGCCAAGTTTGAACTTGAAGGGTGGCAATGGCCCAAAAACTTCAGTTCATGAAGATGGTTTCCACAAAGAAGATTCTTATATGACAGTTTCCCCTTTGGACTGTTATTTCAACACACTGAAAAGAAAATCTAATGAGGATAACCAATATGAGAATCTCATTTCCTTTAACAGGAAGTTGAACATGGAGACCACAATGGATGAATCTTCTATCATCAATAGAGGTTTGAACTGCTACAATGAGGGAGCAGCAGAGCCTAGCATCAACTTTCAAGAGGCAAACCAATCAGCTTTTATAGGAAGCTACCCTCAATGA 1032 0.4244 MEEGGGDQQHASNNIYTFPPGFRFHPSDEELIVHYLQNRISSRPLPASIIAEIDLYKYNPWDLPKKALFGEEEWYFFSPRDRKYPNGLRPNRAAGSGYWKATGTDKPILTSYGSKRIGVKKALVFYLGRPPKGTKTDWIMNEYRLVDTITSPSRLKGSMRLDDWVLCRVRHKGYSSKNSCENQDNPCEPNMLPNLPRGDEGYPTTNMNFQVDMITDYQYKDYQILASILVGGHVPTTESLPSLNLKGGNGPKTSVHEDGFHKEDSYMTVSPLDCYFNTLKRKSNEDNQYENLISFNRKLNMETTMDESSIINRGLNCYNEGAAEPSINFQEANQSAFIGSYPQ 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181531g00001 343 PANTHER NAC TRANSCRIPTION FACTOR 56 18 210 - -
Stsc181531g00001 343 Gene3D NAC domain 27 175 IPR036093 GO:0003677|GO:0006355
Stsc181531g00001 343 Pfam No apical meristem (NAM) protein 19 145 IPR003441 GO:0003677|GO:0006355
Stsc181531g00001 343 ProSiteProfiles NAC domain profile. 18 172 IPR003441 GO:0003677|GO:0006355
Stsc181531g00001 343 FunFam NAC domain-containing protein 72-like 27 177 - -
Stsc181531g00001 343 SUPERFAMILY NAC domain 11 172 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181531g00001 Stsc-Chr181531 5015 6354 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181531g00001 18 181 NAC Transcription Factor Family AT1G61110 68.023 1.94e-79 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Stsc181531g00001 NAM 1.7e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181531g00001 - - gmx:100817193 493.812