LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc181529g00007	ATGGCAGCCGCATTTGGAGGCACAACACAGAAGTGCAAAGCATGTGAAAAGAAGGTCTATTGGGTGGAACAGCTCACTGCTGACAATAAGGTCTACCATAAATCCTGCTTCAGATGTCACCATTGCAAGGGTACCCTCAAGCTGAGTAATTATTGTTCATTTGAGGGAGTTCTATACTGCAAGCCTCATTTTGATCAACTCTTTAAGATGACTGGCAGCTTGGACAAAAGTTTTGAAGGAGTTCCAAGAACTGCTAGGCTTGAAAGATCTGCTGATCAGGTACAAAGCAATAGCAAGGTTTCAAGATTGTTTGCAGGGACTCAAGAAAAGTGTGTTGGTTGCAAGAAAACAGTGTATCCTATTGAAAAGGTGGGTGTGGATGGGAAATGTTACCATAAGGGATGTTTCAGGTGCAGCCATGGAGGGTGTGTAATAAGCCCATCAAACTATGTGGCCCATGAACATCGCCTTTATTGCAAGCATCATCATACTCAGCTCTTCAAGCAGAAGGGTAATTTCAGCCAATTTGACATTCATCATCAAAATGGCCATTGCAATGGTCATGGGACTTCTGAGAATAATAACACAAATTCTTCTGAGTAG	603	0.4245	MAAAFGGTTQKCKACEKKVYWVEQLTADNKVYHKSCFRCHHCKGTLKLSNYCSFEGVLYCKPHFDQLFKMTGSLDKSFEGVPRTARLERSADQVQSNSKVSRLFAGTQEKCVGCKKTVYPIEKVGVDGKCYHKGCFRCSHGGCVISPSNYVAHEHRLYCKHHHTQLFKQKGNFSQFDIHHQNGHCNGHGTSENNNTNSSE	200

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc181529g00007	200	ProSiteProfiles	LIM domain profile.	109	169	IPR001781	-
	Stsc181529g00007	200	SUPERFAMILY	Glucocorticoid receptor-like (DNA-binding domain)	137	175	-	-
	Stsc181529g00007	200	SMART	lim_4	11	63	IPR001781	-
	Stsc181529g00007	200	SMART	lim_4	110	162	IPR001781	-
	Stsc181529g00007	200	SUPERFAMILY	Glucocorticoid receptor-like (DNA-binding domain)	6	37	-	-
	Stsc181529g00007	200	ProSitePatterns	LIM zinc-binding domain signature.	12	46	IPR001781	-
	Stsc181529g00007	200	FunFam	LIM domain and actin-binding 1	6	76	-	-
	Stsc181529g00007	200	CDD	LIM2_SF3	111	171	-	-
	Stsc181529g00007	200	PANTHER	OS06G0237300 PROTEIN	5	95	-	-
	Stsc181529g00007	200	ProSiteProfiles	LIM domain profile.	10	70	IPR001781	-
	Stsc181529g00007	200	FunFam	LIM domain and actin-binding 1	105	175	-	-
	Stsc181529g00007	200	SUPERFAMILY	Glucocorticoid receptor-like (DNA-binding domain)	38	78	-	-
	Stsc181529g00007	200	Pfam	LIM domain	12	66	IPR001781	-
	Stsc181529g00007	200	Pfam	LIM domain	111	166	IPR001781	-
	Stsc181529g00007	200	Gene3D	Cysteine Rich Protein	105	175	-	-
	Stsc181529g00007	200	Gene3D	Cysteine Rich Protein	7	76	-	-
	Stsc181529g00007	200	SUPERFAMILY	Glucocorticoid receptor-like (DNA-binding domain)	103	136	-	-
	Stsc181529g00007	200	CDD	LIM1_SF3	8	69	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc181529g00007	Stsc-Chr181529	41112	42981	Dispersed/Wgd

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	LIM	Stsc181529g00007		LIM	3.6e-10	CL0167

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc181529g00007	K09377		-	gmx:100792627	361.303