Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181528g00007 ATGGATTCATCAAACCATGACCAACCTTGTCCCAAACGAACCTTTGATCACTTATTCACAAAGCCTCCTGCTGATGAAACAGAATCAGAACCACCCCCTTCCGAGACACCCAGGACCATGGACCCTAGAAGGTATCAATTAGAAGTATTTGAAGTTGCAAAGAAGAGGAATACAATAGCAGTATTAGATACAGGTGCTGGTAAGACCTTGATAGCTGTGTTGCTTATAAAAAGCATTGGTGAAGCTATAAGATCCGGTGGCGCCAAAAAGTTGATTATTTTCTTAGCTCCAACTGTTCATCTTGTCAACCAGGCTTGTTCTCCGAGATTCTTACCCCCTTTAATGCAATATAAGAATATAAAAGATCATACGGATTTTCAAGTTCAGGAGTATTATGGGGCAAAAGGAGTGGATGCATGGGATTTAAATGTCTGGGAGAAGGAAATCAGTGAAAATGAGGTAATGGTTATGACACCCCAGCTTCTTTTGGATGCCCTAAGAAAGGCTTTTCTGAAGATAGAGTCAATATGCTTGATGATTATTGATGAGTGTCATCGAGCAACTGGTAACCATCCGTATGCAAAAGTAATGAAGGAATTCTATCACAAAGCTGATGAAAAGCCTAAAATTTTTGGAATGACAGCGTCGCCTGTGGGTAAAAAAGGTGTATCCTCTACTGTGGATTGTGAGGGTCAGATATCAGAACTTGAAAGTATCTTGGATTCTCGGAGATATACTGTAGAAGATAGGACCGAGATGGAAGTATATGTACCTTCTGCAAAAGAAAGTTGTAGATATTATGATCAGGCACAATTCCCTGCTTTGAGTTTGAAGCCAAAGATTGAAGACTTGTGGTCCAAGTCTGGTGCATTGTTATCAGAATTGCAAAGCTCGATTGAAAGTAACTATAAGGATGTGGAGAATAAATTAAAGATGCTGCATAAGCGGATGTCTAATGAACTTGCAAAAGTCTTGTATTGCCTTGAAGATCTTGGCCTCCTATGTGCTTATGAGGCTGTTAAAATATGGCATGAAAGTTTTTCCAAAGTCGAAGGAGAGTGTGAAGTTTACCGAAAAGGTTTTACCCAGTGCAAAGCATTCATTGATGAAGTCATGCAAGTAGTTAAAGAATCCCTCCATCTTGATGATAACAAGACTCCAGAGCTTGATTTTGATTTTTCAAAGGCAGTAGACTTGGGATACTTATCTCCCAAATTGCTTGAACTTATTAAACTCTTCCAATCATTTGGAGATTCGTGTGAGGTATTGTGCCTTGTTTTTGTTGAAAGAATCATCACAGCAAAGGTGATTGAAAGATTTATAAAGAAAGTTCCACAGATATCTCATTTCACGGTTTCCTATTTAACCGGAAACAATACCTCAGCTGGTTCACTGACTGCTAAGAAGCAGAAGGAAATATTGGATTCTTTTCGTTCTGGAAAGGTCAATATATTATTTACTACTGATGTAATTGAGGAAGGAATTCATGTGCCGAAGTGCTCATGTGTGATACGGTTTGACCTGCCGAAGACAGTTCGCAGTTATGTCCAGTCTCGGGGAAGATCTAGGCAGGATAGCTCCCAATTTATTGTGATGTTGGAGAGGGGAAACATTGATCAAAGAAATAAGCTGTTTGACATCATCAGGAGTGAGCGATCCATGACTGAAGCGGCTATATATAAAGAAAATGATGCTTCTAATTTAAGGGTGATTACGGAAGTGAAATCACATGTATACTATGTTGAGTCTACTGGAGCGTCAGCCACCTTGGACTCAAGTGTTAGTCTTTTAAATCGATATTGTGAAAAGCTCCCATGTGATGAGTACTCCCGTGCAAAGCCGAATTTTGAATTCCTGCCTTTGGAAGGGGCTTACAAGTGTAAATTAACATTACCACCTAATGCGGCTTTACAAACTTTAGTCGGTCCCTTAGGTAAAGATGTCCGTTTGGCAAGGAATCTTGTATGTTTAGAAGCTTGTAAGAAGCTGCATCAAATGCATGCCTTAAATGATCATCTCGTCCCTTTCACTGAAGAGCCTCCAGAAGCTGAACATAGTGTGCAAAACAAAGAATCGGGTACGGGTTCAGGTTCAGGAACCACTAGAAGAAAAGAATTACATGGCACAGCCAGCACTCAAGCATTATGTGGTACAATTGAAGACAAACTAGACGGAGCCAAATTTTATGCCTATAGATTTGATTTCAAATGCAGCATTGTCAGTGAAATTTTCTCAGGATTTGTACTCCTGATCGAGTCAAAGTTTGACGATGATGTTGGAAATATTGAATTAGATCTTTATTTGATCAAAAAAACCGTTAAGGCTTCCTTATCTTTCTCTGGGCAAGTTGATTTGAATGCTGAACAGATGATGTATGCAAAATGCTTCCATGAGGTTTTTTTCAATGGTTTGTTTGGGAGATTGGTTCATTGGTCCAAATCAGTAAAAGGAGTAAAGGAATTCTTACTTCAGAAAGACACAAAATCACTGTGGAGCCCACACTTCTATTTGCTTCTACCGCTACAGAAAGGAAATGATGAATGTAAAGGATCTCTAGAAATAAATTGGTCCGGAATAAGTTCTTGTGCTTCCGCCGTTGAATTTTTAAGGAACATGTTTTCACCGGTTGCTGGAGATTGTGATGGTGGCAGTAAAATCGTGTCACCTTGTGATCCCAATTCATCGAAGGAGGAATGTGAAGGCACAGATAAAATTCACTTTGCTAATTGTGTAGTTGATGCTGACAGCATAAAGAACCGGGTAGTTTTGGCCATTCACACTGGGAGAATGTATTGCATTCTTCAAGCAGATACCAACCTATGCGCTGAAAGTCCGTTTGATGGAAACGATGAAAAGTCTCCAGAGAACCACATTACCTTCGCAGACTACTACAAGAAAAGGTATGGGATTGCTATGAAACATCCACGACAACATTTATTGCGTTTGAAGCAAAGTCATAATGCACACAATGTTCTTTTGAATTTCTATGAGGAAGATGAGAAGCAAATTGGCCCAGCAAACAGCAAAATGCCAGCGCATGTTCATATTCCACCTGAGCTTTTATATATTCTTGATGTTAAAAGACATGTTTTAAAGTCAATGTACTTGCTACCATCATTGATGCATCGTCTTGAATCCCTCGTGTTGTCAAGTCAGCTTAGACAAGAGATAGATGGTCAGACTAGCAATTTCAGCATACCTAGCTCTCTGATTCTAGAAGCACTGACAACCTTAAGATGTTGTGAAAAGTTTTCAATGGAACGACTTGAGTTGCTAGGAGATTCTGTTCTTAAGTATGTAGTGAGCTGTCACCTCTTTCTTAAATATCCCAAGAAACATGAAGGACAATTATCTGAAAGACGGAAGTGGGCTGTTTGTAATTCAACCCTGCATAAACTGGGAATAAATCGCAAATTACAGGGGTATATCCAAGATTCTGCATTTGAACCACGCCGTTGGGTTGCTCCAGGAGAGCGTTCTATACATGTAGTTTCTTGTGAATGTGGGGTGGAAACCCCAGAAGTTCCTGTGGATGGAAAATTCCATACTGAAGATCCAAAAGTTGTGGTCGGAAAGCTCTGTGACCGGGGTCACCGCTGGATGTGTTCAAAGACAATTTCGGATTGTGTTGAAGCTCTTATTGGAGCATACTATGTGGGTGGTGGACTAACTGCTGCACTACATATCATGAAGTGGCTTGGCATTGATTCTGAGCTAGAACCATCCTTGGTTGACAAAGCCATCGCTGCTGCGTCTCTCCATACATGTGTACCAAAACTAGAAGAAATTGCAACCCTTGAAAAGAAAATCGGGTATGAATTTTCCATTAAGGGACTCTTACTTGAGGCAATGACACATTTGTCTGAGGCTGAACTTGGGATTGGTTGCTGCTACGAGAGGCTTGAATTTCTTGGCGACTCTGTATTGGATCTTCTTATTACGTGGCATCTTTATCAGACGCATGAAGATATTGATCCAGGAGAGCTGACCGACTTGCGTTCTGCTTCTGTCAATAATGACAATTTTGCACAAGTTGCCGTTAGACGAAACCTTTACCCACATCTTCTGCATAGCTCTGGAGTTTTGTTGAGCCAGATATCCGAATATGTTAAAGTTATTTCTGAATCAGAGAGCAATACCAGATCACTCCCAGGCATTAAAGCCCCCAAGGCACTTGGAGATCTGGTGGAAAGTATTGCTGGGGCTATACTAGTTGATACCAAGCTCAATCTTGATGATTTGTGGAGAATTTTCTATCCTCTGTTGTCTCCCATTGTAACCCCTGATAAACTTGAGTTGCCTCCGTTGCGTGAACTAATTGAATTATGTGACTCTCTTGGATATTTTATCAAAGAAAATTGTAAAAGGAAGGGAACTACGGTGCATGCTGAGCTTAGTGTACAATTGCAAAATGCGCTGTTAGTTCGCGAGGGAAAGGGGATAAATAAGAAAATAGCAAAAGGAGAAGCTGCATTTCACTTGTTGGAAGATCTCAAGAAGAAAGGAATTTCACATGGCAGTAGCATGCCCAAGAGAAAAAGAGAGAATCCTGACTGCCTACGCGATTCATCTAATCCAGAAACCGATACTGGTATTTGCACTGGTCTAACTGACGGAGATTCGAGAAATCCAGTAGCGAATAAGAGGGCAAAATTGGATGAAACTAACACAGGTGAAATTGCATCCGCTGTTTCTTTGCCCCACAAAGACTCATCTACCGAGGACTCTGATTCCATTCCAGTTATTGCATCTATTGATATGAAGAAAGGAGGACCCCGAACCACGCTATATGAACTCTGCAAGAGATTACAGTGGCCATTGCCAGAATTTGATTCAACAGAGTATAAAGATAGATCACTGTTCAGATCCTGCGAAGCCCTGGAAGGAACGAAGGGAATCAACTGCTTTGTGTCAACAATAACCTTGTGCATACCGAATGATGGTAATATTGAATGCAAAGGAGAAGCCAGAGCTGATAAGAAGAGCTCATATGACTCTGCTGCAATTGAAATGCTTAATGAGCTACAACGACTGAGGAAGCTTAAGATCATCGATGCTTAG 5061 0.4062 MDSSNHDQPCPKRTFDHLFTKPPADETESEPPPSETPRTMDPRRYQLEVFEVAKKRNTIAVLDTGAGKTLIAVLLIKSIGEAIRSGGAKKLIIFLAPTVHLVNQACSPRFLPPLMQYKNIKDHTDFQVQEYYGAKGVDAWDLNVWEKEISENEVMVMTPQLLLDALRKAFLKIESICLMIIDECHRATGNHPYAKVMKEFYHKADEKPKIFGMTASPVGKKGVSSTVDCEGQISELESILDSRRYTVEDRTEMEVYVPSAKESCRYYDQAQFPALSLKPKIEDLWSKSGALLSELQSSIESNYKDVENKLKMLHKRMSNELAKVLYCLEDLGLLCAYEAVKIWHESFSKVEGECEVYRKGFTQCKAFIDEVMQVVKESLHLDDNKTPELDFDFSKAVDLGYLSPKLLELIKLFQSFGDSCEVLCLVFVERIITAKVIERFIKKVPQISHFTVSYLTGNNTSAGSLTAKKQKEILDSFRSGKVNILFTTDVIEEGIHVPKCSCVIRFDLPKTVRSYVQSRGRSRQDSSQFIVMLERGNIDQRNKLFDIIRSERSMTEAAIYKENDASNLRVITEVKSHVYYVESTGASATLDSSVSLLNRYCEKLPCDEYSRAKPNFEFLPLEGAYKCKLTLPPNAALQTLVGPLGKDVRLARNLVCLEACKKLHQMHALNDHLVPFTEEPPEAEHSVQNKESGTGSGSGTTRRKELHGTASTQALCGTIEDKLDGAKFYAYRFDFKCSIVSEIFSGFVLLIESKFDDDVGNIELDLYLIKKTVKASLSFSGQVDLNAEQMMYAKCFHEVFFNGLFGRLVHWSKSVKGVKEFLLQKDTKSLWSPHFYLLLPLQKGNDECKGSLEINWSGISSCASAVEFLRNMFSPVAGDCDGGSKIVSPCDPNSSKEECEGTDKIHFANCVVDADSIKNRVVLAIHTGRMYCILQADTNLCAESPFDGNDEKSPENHITFADYYKKRYGIAMKHPRQHLLRLKQSHNAHNVLLNFYEEDEKQIGPANSKMPAHVHIPPELLYILDVKRHVLKSMYLLPSLMHRLESLVLSSQLRQEIDGQTSNFSIPSSLILEALTTLRCCEKFSMERLELLGDSVLKYVVSCHLFLKYPKKHEGQLSERRKWAVCNSTLHKLGINRKLQGYIQDSAFEPRRWVAPGERSIHVVSCECGVETPEVPVDGKFHTEDPKVVVGKLCDRGHRWMCSKTISDCVEALIGAYYVGGGLTAALHIMKWLGIDSELEPSLVDKAIAAASLHTCVPKLEEIATLEKKIGYEFSIKGLLLEAMTHLSEAELGIGCCYERLEFLGDSVLDLLITWHLYQTHEDIDPGELTDLRSASVNNDNFAQVAVRRNLYPHLLHSSGVLLSQISEYVKVISESESNTRSLPGIKAPKALGDLVESIAGAILVDTKLNLDDLWRIFYPLLSPIVTPDKLELPPLRELIELCDSLGYFIKENCKRKGTTVHAELSVQLQNALLVREGKGINKKIAKGEAAFHLLEDLKKKGISHGSSMPKRKRENPDCLRDSSNPETDTGICTGLTDGDSRNPVANKRAKLDETNTGEIASAVSLPHKDSSTEDSDSIPVIASIDMKKGGPRTTLYELCKRLQWPLPEFDSTEYKDRSLFRSCEALEGTKGINCFVSTITLCIPNDGNIECKGEARADKKSSYDSAAIEMLNELQRLRKLKIIDA 1686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181528g00007 1686 Gene3D - 37 285 IPR027417 -
Stsc181528g00007 1686 Gene3D - 399 560 IPR027417 -
Stsc181528g00007 1686 Pfam Type III restriction enzyme, res subunit 53 217 IPR006935 GO:0003677|GO:0005524|GO:0016787
Stsc181528g00007 1686 FunFam Endoribonuclease dicer-like protein 38 287 - -
Stsc181528g00007 1686 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 49 217 IPR014001 -
Stsc181528g00007 1686 SMART riboneu5 1278 1431 IPR000999 GO:0004525|GO:0006396
Stsc181528g00007 1686 SMART riboneu5 1069 1242 IPR000999 GO:0004525|GO:0006396
Stsc181528g00007 1686 Pfam Ribonuclease III domain 1299 1407 IPR000999 GO:0004525|GO:0006396
Stsc181528g00007 1686 Pfam Ribonuclease III domain 1087 1221 IPR000999 GO:0004525|GO:0006396
Stsc181528g00007 1686 Coils Coil 303 323 - -
Stsc181528g00007 1686 ProSitePatterns Ribonuclease III family signature. 1299 1307 IPR000999 GO:0004525|GO:0006396
Stsc181528g00007 1686 ProSiteProfiles PAZ domain profile. 914 1025 IPR003100 GO:0005515
Stsc181528g00007 1686 SMART helicmild6 435 525 IPR001650 -
Stsc181528g00007 1686 PANTHER DICER-RELATED 56 1505 - -
Stsc181528g00007 1686 SUPERFAMILY PAZ domain 914 1025 IPR036085 GO:0005515
Stsc181528g00007 1686 FunFam Endoribonuclease dicer-like 1 588 684 - -
Stsc181528g00007 1686 FunFam Endoribonuclease dicer-like 1 396 559 - -
Stsc181528g00007 1686 MobiDBLite consensus disorder prediction 1 24 - -
Stsc181528g00007 1686 MobiDBLite consensus disorder prediction 687 706 - -
Stsc181528g00007 1686 Gene3D paz domain 901 1023 - -
Stsc181528g00007 1686 ProSiteProfiles Dicer double-stranded RNA-binding fold domain profile. 593 683 IPR005034 GO:0016891
Stsc181528g00007 1686 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 405 566 IPR001650 -
Stsc181528g00007 1686 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 12 204 IPR027417 -
Stsc181528g00007 1686 MobiDBLite consensus disorder prediction 1523 1541 - -
Stsc181528g00007 1686 CDD RIBOc 1069 1233 IPR000999 GO:0004525|GO:0006396
Stsc181528g00007 1686 ProSiteProfiles Ribonuclease III family domain profile. 1050 1222 IPR000999 GO:0004525|GO:0006396
Stsc181528g00007 1686 Gene3D Ribonuclease III domain 1253 1428 IPR036389 GO:0004525|GO:0006396
Stsc181528g00007 1686 Gene3D Ribonuclease III domain 1052 1233 IPR036389 GO:0004525|GO:0006396
Stsc181528g00007 1686 MobiDBLite consensus disorder prediction 1 42 - -
Stsc181528g00007 1686 FunFam Endoribonuclease dicer-like 1 1257 1429 - -
Stsc181528g00007 1686 MobiDBLite consensus disorder prediction 679 706 - -
Stsc181528g00007 1686 CDD RIBOc 1279 1429 IPR000999 GO:0004525|GO:0006396
Stsc181528g00007 1686 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1477 1500 IPR014720 -
Stsc181528g00007 1686 CDD DEXHc_dicer 42 249 - -
Stsc181528g00007 1686 ProSiteProfiles Ribonuclease III family domain profile. 1263 1408 IPR000999 GO:0004525|GO:0006396
Stsc181528g00007 1686 FunFam Dicer-like 104 1045 1234 - -
Stsc181528g00007 1686 Gene3D Dicer dimerisation domain 588 686 IPR038248 -
Stsc181528g00007 1686 Pfam Helicase conserved C-terminal domain 424 522 IPR001650 -
Stsc181528g00007 1686 SMART PAZ_2_a_3 891 1049 IPR003100 GO:0005515
Stsc181528g00007 1686 CDD SF2_C_dicer 401 533 - -
Stsc181528g00007 1686 MobiDBLite consensus disorder prediction 1503 1522 - -
Stsc181528g00007 1686 Pfam PAZ domain 913 1045 IPR003100 GO:0005515
Stsc181528g00007 1686 MobiDBLite consensus disorder prediction 1503 1576 - -
Stsc181528g00007 1686 SUPERFAMILY RNase III domain-like 1065 1239 IPR036389 GO:0004525|GO:0006396
Stsc181528g00007 1686 SUPERFAMILY RNase III domain-like 1263 1428 IPR036389 GO:0004525|GO:0006396
Stsc181528g00007 1686 Gene3D - 1598 1677 - -
Stsc181528g00007 1686 SMART ultradead3 38 248 IPR014001 -
Stsc181528g00007 1686 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 90 541 IPR027417 -
Stsc181528g00007 1686 Pfam Dicer dimerisation domain 593 679 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181528g00007 Stsc-Chr181528 36706 47896 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181528g00007 449 522 Eukaryotic Initiation Factors Gene Family AT3G19760 39.189 1.83e-07 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181528g00007 K11592 - gmx:100806831 2361.26