Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181528g00005 ATGGGTGGTGGTAATGGTAGAGTTGATGTTGTGAGTGGCAAGGGATGCTCAAGGCTGTTTTCATCTTCATTCAGAGGTCTGCAGCCGTTGACGCCAATGTCTTCTGTTCCGTCCTCCCCACATGTTCGATCAAATGCTCCTTTTGCTGGTCTTGTTATATGCGTTACTGGGCTATCTAAAGAAGCAAGGAATCAAGTCATGGAGGCAACAGAAAGATTAGGTGGCCAGTATAGCCCTAATTTGCATCCACAATGTACCCATTTGGTGGTTCAGAGCTCTGCAGGACGCAAGTTTGAGCATGCGCTGAAGCATGGAGCAAAAAATGGTCTCTTTGTTGTCACACTGGGTTGGTTCGTGGATAGTGTCAGGAAAAATGTGAGGTTGAGTGAATCCCGTTACAGTGTGAAGAGTAATGTGGACAATAACACCCGCTTGGAAGATTTTAAACTGCTTCCTGGATATACTGGTACTGAAAATTCTTGTCTTCCAGCAAGTCTTCGTGAAACCAAGCATGTTGATAATGTTGAAGAATTTCAAAGATCTTCTGGTAGAAAATCTAATAGAAGTGAGGACTTCACTTTGTCTGGTTACTCCATCTATATTGATCCAGGAATTTCATTTGAATTGAGGAACAAGGTTGTTGATACTGCCACAAGAGAAGGTGCTAGTCTTGCAGAACGATGGTTTGTTGGATGCAATGTTAGTCATGTAGTGACTGAAGGGACATTCGTACAAAAATATCTTGGATATTCGAGTAACCTCATCACACCACTGTGGATTCTCAAAACAGCCAAGGAGAAATATGCACAACGGCTTGTTCACATGTCTGCTGATTTAGCAAAGCAAGTCGGGTTGATGCTTGAAGAAATTCATAATGGCATTTTGTCGAAGGAAATAAAGAAGCAAAAAGTCAGTGAAGATCATCAGGGCAGTGAAAGTGGATATAGTTACCATGAGAGGCAACAAATTGTTAATACTGCAAAAATTGGTGTAAGAAGTCGCCGTGGTCGGCAAATGCAGACTTGTCAGACTCCAATACGGCCCATAACTCCCAACAACCTTCTAGACTCTATCTGCTGGGGATGGCAAGGACTCAGAAGCTGCATTTTCGAACTCCACTCGTCCTCTAACCGAAAGTGA 1140 0.4307 MGGGNGRVDVVSGKGCSRLFSSSFRGLQPLTPMSSVPSSPHVRSNAPFAGLVICVTGLSKEARNQVMEATERLGGQYSPNLHPQCTHLVVQSSAGRKFEHALKHGAKNGLFVVTLGWFVDSVRKNVRLSESRYSVKSNVDNNTRLEDFKLLPGYTGTENSCLPASLRETKHVDNVEEFQRSSGRKSNRSEDFTLSGYSIYIDPGISFELRNKVVDTATREGASLAERWFVGCNVSHVVTEGTFVQKYLGYSSNLITPLWILKTAKEKYAQRLVHMSADLAKQVGLMLEEIHNGILSKEIKKQKVSEDHQGSESGYSYHERQQIVNTAKIGVRSRRGRQMQTCQTPIRPITPNNLLDSICWGWQGLRSCIFELHSSSNRK 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181528g00005 379 SUPERFAMILY BRCT domain 45 136 IPR036420 -
Stsc181528g00005 379 ProSiteProfiles BRCT domain profile. 43 135 IPR001357 -
Stsc181528g00005 379 CDD BRCT_TopBP1_rpt2_like 47 125 - -
Stsc181528g00005 379 Pfam twin BRCT domain 51 117 IPR001357 -
Stsc181528g00005 379 SMART BRCT_7 45 125 IPR001357 -
Stsc181528g00005 379 SMART BRCT_7 186 267 IPR001357 -
Stsc181528g00005 379 PANTHER BRCT DOMAIN DNA REPAIR PROTEIN-RELATED 3 360 - -
Stsc181528g00005 379 Gene3D BRCT domain 46 137 IPR036420 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181528g00005 Stsc-Chr181528 26903 31260 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181528g00005 36 139 Core DNA Replication Machinery Family AT1G77320 35.577 3.60e-12 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181528g00005 - - gmx:100815253 556.984