Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181526g00013 ATGTCACTTTCCTGTGCCAAGAACTTCTTCCAGAGGTTCTGGATGGATGAATTACAAACGGCAAGTTTCTCACACAGCAGCTTCTTGAACAATGATATCTTACCATCTCTTGGAGCAAGAATAAACCAGGAAACTCGCCTTCGAAAATACATAGTTTCGCCATTCAACCCGCGTTATAGGGCTTGGGAGATGTTACTGGTTGTTCTGGTGGTTTACTCTGCCTGGATTTGCCCCTTTGAGTTCGCCTTTCTGTCTTACAAGCAAGACACACTCTTCATCATAGATAACATTGTCAATGGCTTCTTCGCTGTTGACATCGTCCTTACATTCTTCGTCGCGTATTTAGACAGCCACTCTTATCTTCTAGTTGACGATCCAAAGAAAATTGCAATCAGGTACATCTCTACCTGGTTTGCGTTTGATGTATGCTCAACAGCACCATTCCAGCCAATCAGCCTCCTCTTAACAAATCACAGCAGTGAGCTTGGTTTCAAAGTCCTTAACATGCTTCGACTATGGAGACTCAGACGAGTCAGCTCTCTTTTTGCAAGACTCGAAAAGGACATCCGCTTCAATTACTTCTGGACAAGGTGCACAAAGCTTATTGCTGTAACACTGTTTGCAGTACATTGTGCCGGGTGCTTCAACTATGTAATTGCAGATAAGTACCCGGATTCAAAGAGAACCTGGATTGGGGCGACGTACCCGGATTTCAAAGAAGAAAGCCTTTGGGACAGATATGTCACTGCAATGTACTGGTCCATTGTGACTCTTACAACCACTGGCTATGGAGATTTGCATGCAGAGAACACAGGAGAGATGCTGTTTGATATCTTGTACATGCTCTTCAACCTGGGTTTAACATCATATATCATTGGAAACATGACCAACCTAGTTGTTCACTGGACCAGCCGCACCAGAAACTTCAGAGATACAGTGAGAGCAGCCACTGAATTCGCTTCCAGAAACCATCTTCCGCCACAGATACAGGATCAGATGTTGTCACACATATGCTTGAAGTTCAAGACAGAAGCATTGAAACAGCAGGAAACGTTGAATGATCTTCCAAGGGCGATTCGTTCAAGCATAGCACACCATCTCTTCTTTCCTGTTGTGCAGAAGCTCTACCTCTTCAAAGGAGTCTCTCATGACTTCCTTTTCCAACTGGTTTCAGAAATGGAAGCAGAGTATTTCCCACCCAGGGAAGATGTCGTACTGCAAACCGAGTCTTCCACAGACTTGTACGTTCTGGTTTCAGGGGCAGTGGATCTTGTTCGATACGTTGATGGGCAAGAACAACTTCTTGGCAAAATAATTGCAGTAGATACGGTTGGTGAGATTGGTGTGCTATATCATGTGCCTCAGCCTTTCACAGTTCGGACAACAGAGCTTTCTCAAATACTAAGACTCAAAAGAACATCACTCACCAATGTTTTGCATGCAAATCCCAGAGATGCACAAATTATAACGGATAACTTATTCATGAGGTTAAAGGGACATCAAGAGTCAGGCTTCCAATATCCAAGTGCAGATCCTGGATTGTTTCTTCAGGAACTGCTTCACGGAGGCAACAGAAGAGACAGATTTTCCAGCACTCAGGATGGAAACTGCTTGAATATCACGGATTCTGAGGCCAATTTGCATGAAGACGGCAAAAGAGATCATCTAGACATGGTTGAAATTCTGCTTGAGAGAGACGCAAATGCCATGGGGTGGACACAAAAAGTTCCAGTGCAACAGCTCAAAAGCAAGAGCATCTCTGACCAAACAGTGAGTTGTGAAAAGGAGATGAAATCCTCTGGAGAATATAGAATAGAGGTTGTGGAGCCAGAAATCCTTAACCTTGATAGGAATGACTCAACCATGAACAAAAGGCAAGATGATGGTAGCAGATCTATCAAATTCCCATCAGAGAAAGCACGCACAAACCCTTGTAGAAATTCTACTTCTCAAAGTGATACAGAAACTACTAGGTTCATCAACAAGAGAGTCACAATCCACTTGCAAAGCGGGTGCAAAACTAACCCACAGGGACAGTACGGAAAGTTGATAATCCTTCCTGAATCATTTCAAGAGCTGCTTAACATTGCTGGTAAGCTTTGA 2103 0.436 MSLSCAKNFFQRFWMDELQTASFSHSSFLNNDILPSLGARINQETRLRKYIVSPFNPRYRAWEMLLVVLVVYSAWICPFEFAFLSYKQDTLFIIDNIVNGFFAVDIVLTFFVAYLDSHSYLLVDDPKKIAIRYISTWFAFDVCSTAPFQPISLLLTNHSSELGFKVLNMLRLWRLRRVSSLFARLEKDIRFNYFWTRCTKLIAVTLFAVHCAGCFNYVIADKYPDSKRTWIGATYPDFKEESLWDRYVTAMYWSIVTLTTTGYGDLHAENTGEMLFDILYMLFNLGLTSYIIGNMTNLVVHWTSRTRNFRDTVRAATEFASRNHLPPQIQDQMLSHICLKFKTEALKQQETLNDLPRAIRSSIAHHLFFPVVQKLYLFKGVSHDFLFQLVSEMEAEYFPPREDVVLQTESSTDLYVLVSGAVDLVRYVDGQEQLLGKIIAVDTVGEIGVLYHVPQPFTVRTTELSQILRLKRTSLTNVLHANPRDAQIITDNLFMRLKGHQESGFQYPSADPGLFLQELLHGGNRRDRFSSTQDGNCLNITDSEANLHEDGKRDHLDMVEILLERDANAMGWTQKVPVQQLKSKSISDQTVSCEKEMKSSGEYRIEVVEPEILNLDRNDSTMNKRQDDGSRSIKFPSEKARTNPCRNSTSQSDTETTRFINKRVTIHLQSGCKTNPQGQYGKLIILPESFQELLNIAGKL 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181526g00013 700 Gene3D - 60 300 - -
Stsc181526g00013 700 CDD CAP_ED 377 489 IPR000595 -
Stsc181526g00013 700 SUPERFAMILY Voltage-gated potassium channels 54 300 - -
Stsc181526g00013 700 PRINTS EAG/ELK/ERG potassium channel family signature 291 300 IPR003938 GO:0005249|GO:0006813|GO:0016020
Stsc181526g00013 700 PRINTS EAG/ELK/ERG potassium channel family signature 273 284 IPR003938 GO:0005249|GO:0006813|GO:0016020
Stsc181526g00013 700 PRINTS EAG/ELK/ERG potassium channel family signature 95 105 IPR003938 GO:0005249|GO:0006813|GO:0016020
Stsc181526g00013 700 PRINTS EAG/ELK/ERG potassium channel family signature 72 79 IPR003938 GO:0005249|GO:0006813|GO:0016020
Stsc181526g00013 700 PRINTS EAG/ELK/ERG potassium channel family signature 247 264 IPR003938 GO:0005249|GO:0006813|GO:0016020
Stsc181526g00013 700 PRINTS EAG/ELK/ERG potassium channel family signature 106 115 IPR003938 GO:0005249|GO:0006813|GO:0016020
Stsc181526g00013 700 MobiDBLite consensus disorder prediction 619 635 - -
Stsc181526g00013 700 Pfam Cyclic nucleotide-binding domain 397 480 IPR000595 -
Stsc181526g00013 700 MobiDBLite consensus disorder prediction 641 656 - -
Stsc181526g00013 700 Gene3D Jelly Rolls 370 503 IPR014710 -
Stsc181526g00013 700 FunFam Potassium channel KAT2 365 501 - -
Stsc181526g00013 700 ProSiteProfiles cAMP/cGMP binding motif profile. 377 496 IPR000595 -
Stsc181526g00013 700 SUPERFAMILY cAMP-binding domain-like 304 496 IPR018490 -
Stsc181526g00013 700 MobiDBLite consensus disorder prediction 619 656 - -
Stsc181526g00013 700 PANTHER POTASSIUM CHANNEL AKT1 25 501 IPR045319 GO:0005249|GO:0006813
Stsc181526g00013 700 SMART cnmp_10 377 494 IPR000595 -
Stsc181526g00013 700 FunFam Potassium channel KAT3 61 301 - -
Stsc181526g00013 700 Gene3D Helix hairpin bin 301 367 - -
Stsc181526g00013 700 Pfam Ion transport protein 60 306 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181526g00013 Stsc-Chr181526 48033 50933 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181526g00013 1 699 Ion Channels AT5G46240 58.941 0.0 838
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181526g00013 K21867 - gmx:100811356 1043.88