Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181526g00002 ATGATGAGGAGAAATTATTGCAACTTGGAACTTGGGCTCTTTCCTCCCTATGATTCCGGCCACACCCCAAAGCAAGAGGACCACCACCAACGCCAGATTACAATTTTCTACGACGGAAAGATTTCTGTTTCTCATGTTACAGACCTTCAGGCCAAATCAATCTTAATGCTTGCAAATAAGAGGGCCAATATTATTAGGACACCACCAACAACAACAACGGGATCATCATCATCATCAGACCCATCTTCATCATCATCATTATTACTGCACCAACAATCCAATAATAATAATAATAATAATAATAATAATAATAATAATAGTAATAACACTACTCCTATTACTGGCACTGGACTTTCCATGAAAAGGTCACTGCAAAGGTTCCTACAGAAGAGAAAGAATCGAATCCAAGAAGCTTCCCCTTACCACCATCACTAG 435 0.3885 MMRRNYCNLELGLFPPYDSGHTPKQEDHHQRQITIFYDGKISVSHVTDLQAKSILMLANKRANIIRTPPTTTTGSSSSSDPSSSSSLLLHQQSNNNNNNNNNNNNNSNNTTPITGTGLSMKRSLQRFLQKRKNRIQEASPYHHH 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181526g00002 144 ProSiteProfiles Tify domain profile. 26 60 IPR010399 -
Stsc181526g00002 144 SMART tify_2 26 60 IPR010399 -
Stsc181526g00002 144 Pfam tify domain 30 59 IPR010399 -
Stsc181526g00002 144 MobiDBLite consensus disorder prediction 66 117 - -
Stsc181526g00002 144 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 22 142 IPR040390 -
Stsc181526g00002 144 Pfam Jas motif 121 141 IPR018467 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181526g00002 Stsc-Chr181526 4434 6340 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181526g00002 7 142 Tify Gene Family AT1G30135 37.748 2.23e-17 71.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Stsc181526g00002 tify 1.6e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181526g00002 - - gmx:100500349 107.842