Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181520g00003 ATGATGAGGCTGAAGACATATGCGGGTCTCAGTTTAATTGCAACTCTGGCTATCACATATCATGCATTTAACAGTAGAGGCCAGTTTTATCCGGCAATGGTGTATCTTTCAACTTCCAAGATCAGCTTAGTGCTTCTTCTCAACATGGGTTTGGTTATTATGTGTATTCTATGGCAGTTGACTAAAAAAGTATTCCTTGGTTCTCTTAGAGAAGCTGAGGTAGAAAGGCTTAATGAGCAATCGTGGAGGGAGGTTATGGAAATCCTCTTTGCCATTACCATTTTTAGGCAGGATTTCTCAGTTACATTTCTTGCGATGGTTACGGCGCTGTTGTTGATTAAAGCTTTACACTGGTTGGCTCAAAAGAGGGTTGAGTACATTGAGACTACTCCCACAGTGCCCATGTTGTCGCATGTTCGAATTGTATCTTTTATGGGTTTCCTTCTTCTCCTAGACAGCCTGTTCTTATACAGTAATCTGAAGCATCTGCTACAAACATGGCAACCGTCAGTTTCGATATTCTTTTCTTTTGAGTATATGATACTAGCAACAACAACAGTGTCGATTTTTGTAAAATATCTTTTCTATGTCAGTGACATGCTCATGGAAGGACAATGGGAAAGGAAACCTGTCTTCACATTCTACTTGGAACTTATCAGGGACTTGCTTCACTTGTCTATGTATCTGTGCTTCTTCCTTGTAATTTTTGTAAACTACGGTGTTCCTTTGCACTTAATAAGGGAGCTCTATGAGACATTTAGGAACTTCAAAGTTCGTGTTGCAGATTACATACGATATCGTAAGATCACTTCAAATATGAACGACCGTTTCCCAGATGCAACACCTGAAGAGCTTAATGCAAGTGATGCAACCTGCATTATCTGCCGTGAAGAGATGACTACTGCCAAGAAACTTATATGCGGACATCTGTTTCATGTCCATTGCCTGCGATCATGGCTGGAGCGGCAACATACTTGTCCTACCTGCAGAGCCCTGGTTGTTCCCCCGGAAAATGGGGCAACAGCAACTGGAGGCCAGCAAGGAGCACAATCAGATGCTCATCGACAGGGTAATCTTAATAACCACTGGTAG 1092 0.4203 MMRLKTYAGLSLIATLAITYHAFNSRGQFYPAMVYLSTSKISLVLLLNMGLVIMCILWQLTKKVFLGSLREAEVERLNEQSWREVMEILFAITIFRQDFSVTFLAMVTALLLIKALHWLAQKRVEYIETTPTVPMLSHVRIVSFMGFLLLLDSLFLYSNLKHLLQTWQPSVSIFFSFEYMILATTTVSIFVKYLFYVSDMLMEGQWERKPVFTFYLELIRDLLHLSMYLCFFLVIFVNYGVPLHLIRELYETFRNFKVRVADYIRYRKITSNMNDRFPDATPEELNASDATCIICREEMTTAKKLICGHLFHVHCLRSWLERQHTCPTCRALVVPPENGATATGGQQGAQSDAHRQGNLNNHW 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181520g00003 363 Pfam Ring finger domain 291 330 IPR001841 -
Stsc181520g00003 363 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 264 337 IPR013083 -
Stsc181520g00003 363 PANTHER RING ZINC FINGER PROTEIN 1 358 - -
Stsc181520g00003 363 MobiDBLite consensus disorder prediction 340 363 - -
Stsc181520g00003 363 FunFam ERAD-associated E3 ubiquitin-protein ligase HRD1A 264 339 - -
Stsc181520g00003 363 SUPERFAMILY RING/U-box 272 336 - -
Stsc181520g00003 363 ProSiteProfiles Zinc finger RING-type profile. 292 330 IPR001841 -
Stsc181520g00003 363 SMART ring_2 292 329 IPR001841 -
Stsc181520g00003 363 CDD RING-H2_synoviolin 289 330 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181520g00003 Stsc-Chr181520 17365 20372 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181520g00003 1 358 C3H Transcription Factor Family AT3G16090 80.663 0.0 618
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181520g00003 K10601 - gmx:100782356 674.085