Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181519g00003 ATGGCTAATGTTGGAAGAAACGGCTCGTACGACGTTTTTCTGAGTTTTAGAGGCATAGACACCCGCGAGACCTTCACTAGTTCACTGTATCGTGCCTTGACTCTCAAGGGAGTCAAGACCTTCATGGATGATCCAAAATTGAGAGACGGGGACGAGATCGAACAAGCTCTGATCAACGCCATTCGAGAATCGAGGCTTTCAATTGTTGTTTTCTCTGAGAGGTACGCAAATTCGAGGTGGTGTCTTAATGAGCTTGTGGAGATCGTTGAGTGCATGAGGTCCAAGAAGCAGTTGGTTTGGCCAATCTTCTACAAAGTGGAACCTTCTGAAGTAAGGCACCAGAAGGGAAGTTATGGTGAAGCAATGAAAGCACATGAGGAGAGGTATGGAGTTGGATCACACAAGGTCCAGAATTGGAAGTCAGCTTTGTCTCAGGTTGCAGACTTGAAAGGAAGGAAATATGATACCGGAGTTATTGAATATGAATTTATTGAAGAGTATGTGAAAGAGGTGACTGCTAGATTACAGTGTCATGAACAACTAGATGTTGGAGAACACGTAGTTGGACACGAATCTCGTATACAGGAATTGAAGTCACTTTTAGAGATGGAGAAGACATATGAGACGGTTTGCATGTTGGGGATCTATGGGACTGGTGGAATGGGAAAAACAACACTCGCCAAGTGTCTTTATAACTCCATTGCTCAACAATTCCAATATACCATCTTCTTGGAAAATGTCAGAGAAAGATCAAAAAGCCATGCAGACCTTATAGATCTCCAAGAGACCTTCCTGTCCAAGCTATATGGAAGGGAAAATGTCAAGTTGGGTGGTGTTAGCGAAGGGATCAGTAAACTAAAGAGCATAGTTCAACATAAGAAAGTTCTCCTAGTGCTTGATGATGTTGATAGCACAGACCAATTAGAAAAATTGGCAGCAGGGAAATGTGATTGGTTTGGCTTAGGGAGTAGGATCATTGTAACAACAAGGGATACGCATGTACTAGATGCTCATCGGGTTGAAAAGAGATATGAAATGAGAGGCTTAAATGATGAAGAAGCACTTCAACTCTTTTGTTGGAAAGCTTTCAAAATGAGTCAACCAACAATAGATTACAAACATGTGTCTGACTCTGCAATTATTTATGCAAATGGCCTTCCATTGGCTCTAACAGTAATAGGGTCCCTTTTAGCTACTAAATCTGTGGAGGAATGTGAGTGTGCATTGCAGCAATACAAGAGAATACCACAGAGGAACATACATGACATACTCAAGATTAGCTATGATTGTTTGGAGGAGAACACAAAGAAGGTCTTTTTAGACATAGCTTGTTTTTTCAAAGGGGATAGATTGGAACATGTGGAGAAGGTCATGGAGCGATGTGATGACTTTCTTCCATGTTACAACATTGGACTACTTGTTGAGAAATCTTTGCTTGCTATTAAAGATAATGGATCCTTATGGATGCATGATTTAATACAAGATATGGGTAGAGAAATTGTTCGACAAGAAGCACCGTCAAATCCTGGTCAACGCAGTAGATTGTTTTTATACCAAGATGTTCTCAAAGTATTAAGAGAAAATTCAAAACTGGAGCATTTGAGTTACCTTAAATTCTCAAGGTGTCAATCCATGACTTGTTTGCCAGATATGTCCGGAGTTCCAAATCTGAGAGAACTTAGGCTTGAAGATTGCAAAAACTTGATTTCAGTTCATCAGTCTGTTGGATTTCTTAAAAAGCTTGTAACGTTATATGTATCTCACTGTCCCATGCTCAAAGAGTTTCCAGAAAAAATTTGGTTGCCATCTCTAGAAAATCTTGACCTCATTGACACAAATCTTGAATTCTTCCCACACATAGAGGAAAAGATGTATCGGCCATTAGCTATTACAGTGAAAAATTGTCCTATAAAAGAGCTGCCAAATTCCTTTACTAATCTTGTCGGGCTTGATGTGATAAACCTTGACTGCCCTCTTCTTGGCTTCAGTGGCCTATTACCAAGTGACCTACTCACGTTGCCAGCGGTTGTGTCCTTAAATGACATCCCCCTTGTTGGAGTATGGTTTAGATGGTTACTATACAATAACCATGTAACTGCAAGAAATTTCTCTAGCATAATATTCTTGCATTGCGGAAGATGTGATTTAACAGATGACAGCCTCCAAGTTATTCTTCGGTGTTGCCCGATCTTGGAAGAGTTATACGTACCTTTCAATGACTTTGTATCCCTCCCAAAAAGCATTACAAAATGCGATTCATTGAGAATTCTTGATGTTAGTTATTGCTACGATCTTAGGGATATTCCAAAGCTTCATGGTAGCATTCAGGAAATACATACAAACAATAACTGGCGCTTGTGTTTGAAAACATATAACATGTTATGGTCTCAGACAAAAGAGGAAGTTTATAAATTAAATGTGACTATGCCAAAACTAAGCATGATTCCAAGTTGGTTTGACCATCGTGTTAAAGGAGGAAGTTTATCATTTTGGGCTCGTCGAAAGTTTCCTGCTATTGCTGTTGCATTTATCTTCAAGACAGCTGATTCCAAAAAGAACAGTATACGCCTGAAAATTAACGGTCGCGATGTCAGCCCTTTCCTTGAAGCTTGTTACATACGCAAAAGTCATGTGTTGCTATTTGATCTGCGACGTTTTGAATCTGATGATATGCAGCCAATCCTTGACTCCTATCTGGTGCCAGATAAATGGAATCATTTGGAGGTTGATTGTTTTGACAGAGGCGGCAAAAGATTAATAATAAGTCATTGTGGAGCCTATGTGTACAGGGGAGAAACAGATTTGGAGGATATCCGATTCACATGTCCACATTCCTTCAAGAGAAAGTCATCATCAATACTTGAAGGTAGTCTCCCCAAGAGAAAATGCATCGTTCGCAGATCTTTAGTCTTTGGTCTGCGGGGCTGGAGACATCGTGAAAAACAAAAAAAAAAAAAAGGTAAAAATGGAAGAGGAAACACATCAGCAGAGTTTAAGTCAACATCCATTTATGCTGACCATGGACTAGGTCATTGA 3036 0.3989 MANVGRNGSYDVFLSFRGIDTRETFTSSLYRALTLKGVKTFMDDPKLRDGDEIEQALINAIRESRLSIVVFSERYANSRWCLNELVEIVECMRSKKQLVWPIFYKVEPSEVRHQKGSYGEAMKAHEERYGVGSHKVQNWKSALSQVADLKGRKYDTGVIEYEFIEEYVKEVTARLQCHEQLDVGEHVVGHESRIQELKSLLEMEKTYETVCMLGIYGTGGMGKTTLAKCLYNSIAQQFQYTIFLENVRERSKSHADLIDLQETFLSKLYGRENVKLGGVSEGISKLKSIVQHKKVLLVLDDVDSTDQLEKLAAGKCDWFGLGSRIIVTTRDTHVLDAHRVEKRYEMRGLNDEEALQLFCWKAFKMSQPTIDYKHVSDSAIIYANGLPLALTVIGSLLATKSVEECECALQQYKRIPQRNIHDILKISYDCLEENTKKVFLDIACFFKGDRLEHVEKVMERCDDFLPCYNIGLLVEKSLLAIKDNGSLWMHDLIQDMGREIVRQEAPSNPGQRSRLFLYQDVLKVLRENSKLEHLSYLKFSRCQSMTCLPDMSGVPNLRELRLEDCKNLISVHQSVGFLKKLVTLYVSHCPMLKEFPEKIWLPSLENLDLIDTNLEFFPHIEEKMYRPLAITVKNCPIKELPNSFTNLVGLDVINLDCPLLGFSGLLPSDLLTLPAVVSLNDIPLVGVWFRWLLYNNHVTARNFSSIIFLHCGRCDLTDDSLQVILRCCPILEELYVPFNDFVSLPKSITKCDSLRILDVSYCYDLRDIPKLHGSIQEIHTNNNWRLCLKTYNMLWSQTKEEVYKLNVTMPKLSMIPSWFDHRVKGGSLSFWARRKFPAIAVAFIFKTADSKKNSIRLKINGRDVSPFLEACYIRKSHVLLFDLRRFESDDMQPILDSYLVPDKWNHLEVDCFDRGGKRLIISHCGAYVYRGETDLEDIRFTCPHSFKRKSSSILEGSLPKRKCIVRRSLVFGLRGWRHREKQKKKKGKNGRGNTSAEFKSTSIYADHGLGH 1011
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181519g00003 1011 PRINTS Disease resistance protein signature 383 397 - -
Stsc181519g00003 1011 PRINTS Disease resistance protein signature 289 303 - -
Stsc181519g00003 1011 PRINTS Disease resistance protein signature 749 765 - -
Stsc181519g00003 1011 PRINTS Disease resistance protein signature 212 227 - -
Stsc181519g00003 1011 Gene3D - 348 432 IPR042197 -
Stsc181519g00003 1011 SUPERFAMILY L domain-like 488 799 - -
Stsc181519g00003 1011 Gene3D Ribonuclease Inhibitor 514 625 IPR032675 -
Stsc181519g00003 1011 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 10 599 IPR044974 GO:0006952
Stsc181519g00003 1011 Pfam NB-ARC domain 196 409 IPR002182 GO:0043531
Stsc181519g00003 1011 Gene3D Ribonuclease Inhibitor 629 797 IPR032675 -
Stsc181519g00003 1011 ProSiteProfiles TIR domain profile. 8 175 IPR000157 GO:0007165
Stsc181519g00003 1011 SUPERFAMILY Toll/Interleukin receptor TIR domain 7 151 IPR035897 -
Stsc181519g00003 1011 FunFam Disease resistance protein (TIR-NBS-LRR class) 6 177 - -
Stsc181519g00003 1011 SMART till_3 9 149 IPR000157 GO:0007165
Stsc181519g00003 1011 Gene3D - 7 172 IPR035897 -
Stsc181519g00003 1011 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 184 442 IPR027417 -
Stsc181519g00003 1011 Gene3D - 173 343 IPR027417 -
Stsc181519g00003 1011 Pfam TIR domain 10 171 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181519g00003 Stsc-Chr181519 14911 19541 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181519g00003 193 516 WRKY Transcription Factor Family AT5G45050 38.906 8.54e-52 196
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181519g00003 - - aprc:113846827 852.818