Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181517g00009 ATGGATACTACTACTACTACTACCACCAAGAAATCCCCCTTGAAGCCATGGAAGAAGGGTCCAACTAGAGGGAAAGGCGGCCCCCAGAACGCTTCGTGCGAGTATCGAGGTGTTCGGCAAAGAACTTGGGGGAAATGGGTTGCTGAGATCAGAGAGCCAAAGAAGAGAACCAGGCTCTGGCTTGGTTCTTTTGCCACGGCTGAAGAAGCCGCCATGGCTTATGATGAGGCTGCTCGGAGGCTCTATGGACCGGATGCATATCTTAACCTTCCCCACCTAAAACCGAGTTCGAACTTTCCCATCAAATCTGGGAAATTTAAATGGATGCCATCCAAGAACTTCATTTCAATGTTCCCTTCTTGTGGGTTACTCAATGTGAATGCTCAACCTAGTGTTCATTTAATCCATCAGAGGCTGCAGCAGTTTAAGAAGAGTGGGGTTCTGAATCAATCTCCTAGTTCATCCAATGATCCAAAGGCTGAAATTCAGAATGTAAAAGAAAGCAAAGTTCAGGCAGAAGAATATCCTCTGGAGGAGACAAACACTCGAGCATCATCGGAGGCGATGCTTGGTGATATTCACGAGAAGCCACAGATAGACCTTCATGAGTTTCTTCAGCAGATGGGAATACTGAAAGCAGAAATACAGGAAGAGAGAACTGATAGCTCGGGGAGTTCGACAATGCCTGAAGCTGCATCGTGTGATAACTATGCTCAACTAGGCCTGTTTTCTGACAACAGTGTTAACTGGGAAGAACTGGTTGGGATGCATGGAATTGCAGATTTTCAGGAATCTGAATCCACCCAGTTCGAAGCATATGAAACAAATGATGAGCTCAATTTCTATTCTTCTATCTGGAACTTCTAA 867 0.4544 MDTTTTTTTKKSPLKPWKKGPTRGKGGPQNASCEYRGVRQRTWGKWVAEIREPKKRTRLWLGSFATAEEAAMAYDEAARRLYGPDAYLNLPHLKPSSNFPIKSGKFKWMPSKNFISMFPSCGLLNVNAQPSVHLIHQRLQQFKKSGVLNQSPSSSNDPKAEIQNVKESKVQAEEYPLEETNTRASSEAMLGDIHEKPQIDLHEFLQQMGILKAEIQEERTDSSGSSTMPEAASCDNYAQLGLFSDNSVNWEELVGMHGIADFQESESTQFEAYETNDELNFYSSIWNF 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181517g00009 288 CDD AP2 33 93 IPR001471 GO:0003700|GO:0006355
Stsc181517g00009 288 MobiDBLite consensus disorder prediction 1 33 - -
Stsc181517g00009 288 SUPERFAMILY DNA-binding domain 34 92 IPR016177 GO:0003677
Stsc181517g00009 288 Gene3D AP2/ERF domain 34 92 IPR036955 GO:0003700|GO:0006355
Stsc181517g00009 288 PRINTS Ethylene responsive element binding protein signature 35 46 IPR001471 GO:0003700|GO:0006355
Stsc181517g00009 288 PRINTS Ethylene responsive element binding protein signature 57 73 IPR001471 GO:0003700|GO:0006355
Stsc181517g00009 288 SMART rav1_2 34 97 IPR001471 GO:0003700|GO:0006355
Stsc181517g00009 288 ProSiteProfiles AP2/ERF domain profile. 34 91 IPR001471 GO:0003700|GO:0006355
Stsc181517g00009 288 Pfam AP2 domain 33 83 IPR001471 GO:0003700|GO:0006355
Stsc181517g00009 288 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 7 254 - -
Stsc181517g00009 288 FunFam Ethylene-responsive transcription factor 2 33 92 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181517g00009 Stsc-Chr181517 48402 49268 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181517g00009 10 288 AP2-EREBP Transcription Factor Family AT3G57600 51.064 7.62e-87 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Stsc181517g00009 AP2 2e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181517g00009 - - gmx:100801311 424.861