Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181517g00005 ATGAATCACTTGACTGTTGAGACTGAAGATTCTTTTGCAGGCTTACTTGAGCTTGCAGCCAATAACGATGTCGATGGTTTCAAACGAATGATTGAGTGCGATCCTTCCTCTGTGGATGAGGTTGGACTGTGGTATGGCCGTCGGAAGGGATCAAAGCAGATGGTCAATGAGCAAAGAACACCTTTGATGGTTGCTGCTACCTATGGTAGCATCGATGTTATGAGAATGATTCTTTCACTCTCTGAAGCTGATATCAACCGGCCTTGTGGTGCTGACAAGAGCACTGCCCTTCATTGCGCAGCATCCGGTGGGTCTGATAATGCTGTGGATGCTGTAAAGCTGCTTCTTGCAGCGGGTGCTGATCCAAATGCTGTGGATTCCAGTGGGCATCGTCCCATAGATGTTATTGTTTCTCCTCCTAAGCTTGAATGTGTCAAAAACAGTCTTGAAGAACTTCTTCAAACTGATGATTCTATTACAGGGTGTAATTTGAGGGTGATCACAACCTCATTCAATTCATATTCTCCACCTTTGTCAACTTCACCTGAGAATGGGTCCCCTTCTGCCCCAGATTTCCAATTGAAGTTAAAGTCGAGCGATGTCCCTGCATCATCTGTGTCTGAGAAGAAAGAATACCCAGTTGATCCATCCCTTCCAGACATTAAGAACAGCATTTATTCAACTGATGAGTTCCGGATGTATTCTTTCAAGGTTCGACCTTGTTCACGAGCTTATTCTCATGATTGGACTGAATGCCCTTTTGTGCATCCGGGGGAGAATGCTCGGAGAAGGGACCCAAGGAAGTACCATTATAGTTGTGTCCCTTGTCCTGATTTTCGAAAGGGTGCTTGCCGGCGAGGAGATATGTGTGAATATGCTCATGGGGTTTTTGAGTGCTGGCTTCATCCAGCACAATACAGAACTCGTCTTTGCAAGGATGGGACAAGTTGTTCCAGACGAGTTTGCTTCTTTGCCCACACTACTGAAGAGCTTCGGCCCTTGTATGTTTCAACTGGTTCTGCGGTTCCCTCTCCTCGTTCAAGCACATCTTCGGCCATGGATTTTGCTGCAGCCATGAGCATGTTGCCTGGCTCTCCTTCTTCAATGTCTGTCATGTCTCCTTCACCATTCACTCCGCCGATGTCACCTTCTGCAAATGGCATGTCCCATTCCTCTGTTGCTTGGCCGCAGCCAAATGTTCCAGCCTTGCATCTACCAGGAAGTAACCTTCAGTCTAGTCGCCTGAGATCTTCCCTCAATGCTAGAGATATCCCTATGGATGACTTTGACATGTTGTCTGATTATGATCAGCAGCAGCAGCTCATGAATGAGTTGTCTTGCCTCTCCCCACAGCCTATGAATTCTAATTCACTAAATCGCTCTGGTCGCATGAAGCCACTGACTCCTTCAAATCTTGATGATCTTTTTTCTGCTGAGAGTTCTTCTCCTCGATTTGCTGATCCAACTCTGACATCAACTGTCTTTTCTCCAACTCACAAATCAGCCGTGTTCAATCAATTTCAGCAGCAGCAAAGCCTGTTGTCACCTATTAATACAAATTTCTCGTCTAAAGGTGTTGAGCATCCTTTATTGCAGGCCTCTTTTGGGGTTCAGCCATCGGGAAGAATGTCTCCACGAACGGTCGAACCTATTTCTCCAATGAGTTCTAGGCTTTCTATGCTTGCTCAACGTGAGAAGCAACAACAGTTTCGCAGCCTTAGCTCCCGGGAACTTGGCTCCAACTCTGCTTCTGCAGCAGCTGCAGCTGCTTCTGTCAATTCTTGGTCAAAATGGGGATCTCCCAATGGTAAGTTGGATTGGGNNNNNNNNNNGGTAGGTGCTGATGAATCAGGTGGTGGTGGTAAGCTGCGTCGATCTTCCTCATTTGAACTCGGCAACAATGGTGAGGAGCCTGATTTGTCATGGGTGCAGTCACTTGTCAAGGAGTCTCCAACCGAAATCAAAGAGAAGTTGACAGCTAATGTCTCAAGTGCTGCAGCTGCTGGATCCTTGAATGAAGGATCAAATTTGGGCACACAAATGGAGTCTGTTGATCATGCCGTATTGGGAGCATGGCTCGAACAGATGCAGCTTGACCATCTTGTGGCCCAGCAAAATTAA 2121 0.4653 MNHLTVETEDSFAGLLELAANNDVDGFKRMIECDPSSVDEVGLWYGRRKGSKQMVNEQRTPLMVAATYGSIDVMRMILSLSEADINRPCGADKSTALHCAASGGSDNAVDAVKLLLAAGADPNAVDSSGHRPIDVIVSPPKLECVKNSLEELLQTDDSITGCNLRVITTSFNSYSPPLSTSPENGSPSAPDFQLKLKSSDVPASSVSEKKEYPVDPSLPDIKNSIYSTDEFRMYSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKYHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTSCSRRVCFFAHTTEELRPLYVSTGSAVPSPRSSTSSAMDFAAAMSMLPGSPSSMSVMSPSPFTPPMSPSANGMSHSSVAWPQPNVPALHLPGSNLQSSRLRSSLNARDIPMDDFDMLSDYDQQQQLMNELSCLSPQPMNSNSLNRSGRMKPLTPSNLDDLFSAESSSPRFADPTLTSTVFSPTHKSAVFNQFQQQQSLLSPINTNFSSKGVEHPLLQASFGVQPSGRMSPRTVEPISPMSSRLSMLAQREKQQQFRSLSSRELGSNSASAAAAAASVNSWSKWGSPNGKLDWXXXXVGADESGGGGKLRRSSSFELGNNGEEPDLSWVQSLVKESPTEIKEKLTANVSSAAAAGSLNEGSNLGTQMESVDHAVLGAWLEQMQLDHLVAQQN 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181517g00005 706 Gene3D - 3 152 IPR036770 -
Stsc181517g00005 706 MobiDBLite consensus disorder prediction 609 631 - -
Stsc181517g00005 706 MobiDBLite consensus disorder prediction 447 466 - -
Stsc181517g00005 706 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 275 295 IPR000571 GO:0046872
Stsc181517g00005 706 PRINTS Ankyrin repeat signature 111 125 IPR002110 GO:0005515
Stsc181517g00005 706 PRINTS Ankyrin repeat signature 58 73 IPR002110 GO:0005515
Stsc181517g00005 706 PANTHER UNKEMPT FAMILY MEMBER 17 650 IPR045234 -
Stsc181517g00005 706 MobiDBLite consensus disorder prediction 536 558 - -
Stsc181517g00005 706 ProSiteProfiles Zinc finger C3H1-type profile. 275 297 IPR000571 GO:0046872
Stsc181517g00005 706 MobiDBLite consensus disorder prediction 447 480 - -
Stsc181517g00005 706 FunFam Zinc finger CCCH domain-containing protein 66 228 296 - -
Stsc181517g00005 706 SMART ANK_2a 92 124 IPR002110 GO:0005515
Stsc181517g00005 706 SMART ANK_2a 57 87 IPR002110 GO:0005515
Stsc181517g00005 706 Gene3D - 270 333 - -
Stsc181517g00005 706 ProSiteProfiles Ankyrin repeat profile. 92 127 IPR002110 GO:0005515
Stsc181517g00005 706 MobiDBLite consensus disorder prediction 371 393 - -
Stsc181517g00005 706 MobiDBLite consensus disorder prediction 175 194 - -
Stsc181517g00005 706 SUPERFAMILY Ankyrin repeat 17 146 IPR036770 -
Stsc181517g00005 706 Pfam Ankyrin repeats (3 copies) 19 126 IPR002110 GO:0005515
Stsc181517g00005 706 SMART c3hfinal6 270 296 IPR000571 GO:0046872
Stsc181517g00005 706 SMART c3hfinal6 305 328 IPR000571 GO:0046872
Stsc181517g00005 706 ProSiteProfiles Ankyrin repeat region circular profile. 92 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181517g00005 Stsc-Chr181517 25581 29825 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181517g00005 6 699 C2H2 Transcription Factor Family AT5G12850 53.361 0.0 679
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Stsc181517g00005 Ank_2 4.7e-10 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181517g00005 - - ccaj:109796653 1158.28